| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5304 |
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| Symbol | |
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| ID | 6246789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | + |
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| Start bp | 2437960 |
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| End bp | 2439432 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642597025 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001861428 |
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| Protein GI | 186474086 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.78999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0292267 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCCTA CAATCGAACT CCGTGCGAAG CAAACCTTCG CGCTCACACC GCGCCTGCAG
CAGTCCGTGC GTCTGCTTCA ACTGTCGTCG CTGGAGTTTC AGCAAGAACT GCGCAACGCA
CTCGACACCA ATCCCTTCCT CGAATATGAT CCGTCCGTTC CGGAAGACCT GTCAGCCGGC
AAGACGGCTG ACGGCACGGG CGCGGACGGC GAATCCCTGC CTGCCGCCGA GCGCGACAAT
GCGCTCGAAA CCTCGCAGGC CGAACCGGCC GCGGAGAGCG TCGCCGCGTC GGACGATGGC
GGCGACTATG CCGGCGACGC GTATGGCCGC GGGCCGTCGC GCTACAACGG CGATTCCGAA
GCTGCCGATC CGACCGAATG GGCGCGCGCT CAGCCGACGT TGCATGAGCA GTTGCATGAC
GCGTTGCGAC TCTACCGGCT CGACGATCGC GACCGCGAAG TCGCGCGACT CGTGATCGAA
GCGCTCGACG ACGACGGCTA TCTGCGCCAG GATCTCGCCG ATCTCACCGA TATCGTCGAT
ATCGAACCGG AACTGACTGA AGATGAACTG CTGGTGGCGC TGCGACTCGT GCAGACGCTG
GACCGGCCGG GACTCGCCGC GCGCTCGCTG TCCGAATGCC TGTCGCTGCA ACTGGACGCG
TTGCCCGCCG ATACACCGGG CCGCAACGTC GCGAAACAGG TGGTCGAACA TCATCTCGAC
CGGCTCGCGC GCCGCGAACA CGCGGAGTTG CAGAAGCAGA TCGGCTGCGA CGCGGAAGAA
TTGCGCGTGG CCTGCGCGCT CGTACGCAAG CTCGATCCGA AGCCGGGCAA CTCATACGGC
CGCGCCGACG ACAATTACAT CGTCCCCGAT GTGATCGTGC GCAGTGTGCG CAACAAGTGG
GTCGTCACAG TCAACCCTGC CGTGCTGCCG CGTGCGCGTA TTCATCGCAT GTATGCAGAG
TTGTTCGCGC AATCGGCGGG CGCGAGCCGT TCGCCACTCG CGCAGCAGTT GCAGGAAGCG
CGCTGGCTGA TCCGCAACGC CCAACAGCGC TTCGAGACGA TCCAGCGCGT GGCCGAGTGC
ATCGTCGCGC ATCAGAAGCC GTTCTTCCAG TACGGCGAGA TTGCGCTGAA GCCGCTCGTG
TTACGCGATG TCGCCGAAGA ACTCGGCCTG CACGAATCGA CGATCTCGCG TGCGACGGGG
AACAAGTACA TGGCCACGCC GCGCGGCATC TTCGAGTTCA AGCATTTCTT CCCGCGCGAA
CTCGGCACGG AAAGCGGCGG AACCTGCTCG GCCGCCGCGG TGCGCGCGCT CCTGAAGGAA
ATGATCGCAG CCGAGAACAC CCGCGACCCG CTCTCCGATG TCGCGCTCGC GAAGATGCTT
GCCGACCAGG GCGTGCTTGT CGCGCGACGC ACGGTCGCGA AGTATCGCCA TCTGATGAAG
GTGCCGCCTG CGGAGTTGCG CCGCCAGGTG TGA
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| Protein sequence | MPPTIELRAK QTFALTPRLQ QSVRLLQLSS LEFQQELRNA LDTNPFLEYD PSVPEDLSAG
KTADGTGADG ESLPAAERDN ALETSQAEPA AESVAASDDG GDYAGDAYGR GPSRYNGDSE
AADPTEWARA QPTLHEQLHD ALRLYRLDDR DREVARLVIE ALDDDGYLRQ DLADLTDIVD
IEPELTEDEL LVALRLVQTL DRPGLAARSL SECLSLQLDA LPADTPGRNV AKQVVEHHLD
RLARREHAEL QKQIGCDAEE LRVACALVRK LDPKPGNSYG RADDNYIVPD VIVRSVRNKW
VVTVNPAVLP RARIHRMYAE LFAQSAGASR SPLAQQLQEA RWLIRNAQQR FETIQRVAEC
IVAHQKPFFQ YGEIALKPLV LRDVAEELGL HESTISRATG NKYMATPRGI FEFKHFFPRE
LGTESGGTCS AAAVRALLKE MIAAENTRDP LSDVALAKML ADQGVLVARR TVAKYRHLMK
VPPAELRRQV
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