| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5197 |
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| Symbol | |
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| ID | 6246687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | + |
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| Start bp | 2318659 |
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| End bp | 2321172 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642596923 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001861326 |
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| Protein GI | 186473984 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0918871 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATGGC TTGACCAACC CCGCACGCTG GAGATAGTTA GCGCAGGCCT GCCGAAGTGG
CAGGATGAAT GCCTCTTCAC GGTATCGCGC CTGACCGGCA CCGAAAAGCT CGGCAGGCTC
TACGACTACA CCGTGGAGAT TGCGACGAAG GACGATATCG GCCTGACCGT GCATGAGGCA
AGAGCCATGG TCAAGGTGGA CAAACTGGTG GGCAAGCAGG TGACGGTGAA GATCGCTACC
GAGGGTAGCG GCACCTACGA GACGGGAACA ATCGGCGTGT CCCCGCCGAT CAATATCGGC
GCAGGCGTGC GCGAGATCAC CGGCCTGATC GTCTCGGCGC AGTGCGTCGG CTCGGATACG
CGGCGGGCGT TCTACCGCTT AAGGATTCGC CCATGGCTCT TTTTAGCGAC CCTTAACCAG
GACTCAAGAA TCTTCCAGGA CCTCACGGTC AAGGAAATCT CCGAAACGAT CCTGAAAAAG
TATCCGTTTC ACTATGAACT GCGCCTGGCC GGCCCCGGCT TCGGACGGCA GTATCCGAAG
CGCGACTACC AGCGCATGTA TTGGGAGAGC GACTGGGGCT ATCTCAATCG CCTGTGGCAG
GAATGGGGCA TCACGTTCTT CTACGATGGC CCGACGCTCG TGCTGTGCGA TTCGACCGCC
GCCTACAAGA AGCACGGCCC CGCGTATGCG ACGCTACGAT ACCAGGACCG CGACGGCCAG
CGCATCGATG AGGAACATGT ATACCAGTTC GAGATCGCAC GCGCCCTGAC CACGGGCAAG
GTCAGCGTCA CCGACTACGA CTACACGCAG TCGCGCGCGA ATCTCGCCGC GAAGGATTCG
GACTACCGCG AGCGCGCGAA CGACAACATC GAGCACTACG CCTGGGGCGA CTACTCGCAG
CCGCTGGCCG GGGCGATGGG GACCGCCGCG CAGCCCAATG AGGTGGACTT CGAGGGCGAG
CACCTGGCAC GCGTGCGGCT GGAAGCAAAA CGGGCGAAGA GTCTGCGCGG CAAGGGGCGC
GGCAACATGC GCGGGCTGAG GGTGGGCTAT ACGTTCCACC TGGAAGGCTA TCCGCTCGCA
CCGGGCAATG GCGAATACCT GGTCGTCGCG ACGAAGATCG AGATCGTCAA CAACGACACG
GTGACGAACC GGGGTGCGCT GCAACGTCAG TACACGTGCG ACACGCAGTT CACGGTGCAG
CCCGCCAATA CGTATTTCCG CACGCCGCAG AAGGCGAAAA AACCGCGCTC GCATGGCGAG
GTGGCGATTG TGACGGGCTA TTCGGATTCA AAAATCTGGA CCGACAGGTA TGGCCGCGCG
AAGGTCTGGT TCCCGTGGGA TCGCGAGGGC CAGCAGGACC AGGATTCCAG CTGCTGGGTG
CGGGTATCGT CGCCTTGGCA GGGTGCGAAC TACGGCGCGA TCTACATTCC GCGCGCGGGC
CACGAAGTGG TGATCGGGTA TCAGGACAAT GATCCGGACA AGCCCTATAT CGCGGGGCGG
CACGTCAACC AGTTCCACGA GCCGCCGTGG CCCCTGCCCG CCAACCAGGC GCTTTCGGGC
TGGCTGAGCG AGGACCTGGA GGGGCCAACG ACGAACAGCG TTGTCACCGA CGATACGCCC
GGCAAGCTCC AGGTGCAGGT GGCGAGCGAC CACGCGGCCT CGCGCCTGGT GCTGGGCAGC
AATACGCGCA TCGACCGGCG CAAGGGCCGC AGCGAGGCGC GCGGCGAGGG GTTCGAACTG
GCGACGGAGG CGCATGGCGT GGCGCGCGCA AACCGGGGCC TGCTGCTGAC GACCGAGACG
CGCGCTGGCG CGGGTGTGCC CGTAAAGGAC ATGGGCGAGA CGGTGCAGCG GCTCACGCAG
GCGCGCGAAC TGCACGAGGA CATGGCGCAG TTCGCACAGA AGCACAAGGC GCAGGATTTA
ACGGTGAGCC AGGGCGACGC AACGGTGGGC ATGAAGGCGC AGAACGAGGC CATCAAGGGC
GGCGCGAAAA GCACCGCGAA CCCGTCGCCG GAGATGACGC GGCCAGACCT CGTGCTGGCG
AGCGCGGCGG GTATCGCAGT GACCGCCAGC GAGAGCATGC ACCTGGCGAG CCAGAACGAT
CACGCGATCA CGGCGGGCCG GGACGTGAGC ATTGCGTCGG GCCGCTCGTG GCTCGCATCG
GTGCGCGGTG TCCTCTCGTT CGTGGCAGGG CTCGGCATCC GTCTGTTTGC GGCGAAGGGC
AAGGTCGAGA TTCAGGCGCA GGGCGACGCG ATGGCGCTCG CGGCCCTGAA GGACATCACG
ATTAGCAGCA CGAACGGAAG GATCGTTATC AACTCGGCCA AGGAAGTCTG GCTTGGCGCG
GGTGGCTCGT TTATCCAGAT CAACGGTAGC GGCATCGTCA ACGGCTCGCC GGGACCGATT
CTGGAGAAGG GGGCGAAGTG GAGCAAGCAA GGAGCGGACA CGCAACATCC GGCACTCCCG
CCCATGCCGC AAGGTGAACT GAAAACTACC AACCTCTATT CCAAATCACG CTGA
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| Protein sequence | MSWLDQPRTL EIVSAGLPKW QDECLFTVSR LTGTEKLGRL YDYTVEIATK DDIGLTVHEA
RAMVKVDKLV GKQVTVKIAT EGSGTYETGT IGVSPPINIG AGVREITGLI VSAQCVGSDT
RRAFYRLRIR PWLFLATLNQ DSRIFQDLTV KEISETILKK YPFHYELRLA GPGFGRQYPK
RDYQRMYWES DWGYLNRLWQ EWGITFFYDG PTLVLCDSTA AYKKHGPAYA TLRYQDRDGQ
RIDEEHVYQF EIARALTTGK VSVTDYDYTQ SRANLAAKDS DYRERANDNI EHYAWGDYSQ
PLAGAMGTAA QPNEVDFEGE HLARVRLEAK RAKSLRGKGR GNMRGLRVGY TFHLEGYPLA
PGNGEYLVVA TKIEIVNNDT VTNRGALQRQ YTCDTQFTVQ PANTYFRTPQ KAKKPRSHGE
VAIVTGYSDS KIWTDRYGRA KVWFPWDREG QQDQDSSCWV RVSSPWQGAN YGAIYIPRAG
HEVVIGYQDN DPDKPYIAGR HVNQFHEPPW PLPANQALSG WLSEDLEGPT TNSVVTDDTP
GKLQVQVASD HAASRLVLGS NTRIDRRKGR SEARGEGFEL ATEAHGVARA NRGLLLTTET
RAGAGVPVKD MGETVQRLTQ ARELHEDMAQ FAQKHKAQDL TVSQGDATVG MKAQNEAIKG
GAKSTANPSP EMTRPDLVLA SAAGIAVTAS ESMHLASQND HAITAGRDVS IASGRSWLAS
VRGVLSFVAG LGIRLFAAKG KVEIQAQGDA MALAALKDIT ISSTNGRIVI NSAKEVWLGA
GGSFIQINGS GIVNGSPGPI LEKGAKWSKQ GADTQHPALP PMPQGELKTT NLYSKSR
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