| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5028 |
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| Symbol | |
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| ID | 6246525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phymatum STM815 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010623 |
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| Strand | - |
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| Start bp | 2124873 |
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| End bp | 2126786 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642596757 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001861164 |
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| Protein GI | 186473822 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00518109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.939284 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGC ATACGGCAGC CACACCGACC CTGACGCGCT CGCTGGGCCG CGTCAATCTG
ATCGGCGTGA CCGTCGCGCT GCTGATCTCT GGCATCGTTC TGCTCGTCTA TCAGGCCGTA
TCGCTGCGCG CATCGTTGAC GGACATCGCC CGTCTGCAGG CGGCAATGGT GTCGGAGAAC
GTGTCGGCGG CGCTCGTGTT TGGCGACAGA CGGGCGGCGG GCGACGTGCT CCAGCATATG
CGCAGTTTGC CGTACGTCGA AAGCGTCGCC GTGTTCGACA AAGACGACGC GCGCTTCGTC
CTCTATGCGC GCGAAGGCGT CTCCGACGCG GAGCGCAACG AAGGCACGCT GGAATCCGTC
TCGCACCCGC GACGCCTTTC CTTCGAAGAC GTGATCGTGT CCGCGCCAGT CGAACTGAAC
GGCGAACATC TCGGGACCGT CGTGCTGGTT GCGACGACGG AGCAGATGCA GGCGCAGTTC
CAGCGATACG CATCGTTCAT TTTCGGCGCG TCCGCGTGCG CGTTGCTGAT TGCCCGCTTC
GTGATGACGC GGATGAAATC GCGTCTCAAC GACGCGGAGC GGCGGCTCGA GTATCTCGCG
CTCACGGACC CGCTCACCGA CCTCCCCAAC CGCCGCGCGT TCTTCGAAGA ACTGGAGCGT
CGCATTGCAT CGCCGGCGCG CTCGAAAGCG CCGCTGACGC TCGTGCTGAT CGACGTCGAC
GACTTCAAGA CGATCAACGA CACGCTCGGC CATGGCGCCG GCGACGAGCT GTTGAAGCTG
GTGGCGGCGG CGCTCAAGGA AACGGTGCGC GCCGGCGATA TCGTGAGCCG CATCGGCGGC
GACGAATTCG CCGTGCTGGC GTCGCTTGAC AGGGAGCCGC ATCAAAGCCA GTCGACCGCC
GCAAAGATCG TTCTTGCACT GGCCCGCCCG TTCACATTGC AGGGACGCAG CGTCGCGGTG
ACGGCGAGCA TCGGCTACAG CCGTTTCCCG GACGATGCCG ACGACGTCCC CGCGCTGGTC
AGCAATGCGG ACATCGCGCT ATACGCGGCG AAGAACAATG GCAAGAACAC GGCCGTCGCG
TTCGAGCACC ACATGGTCAC GCAGGCGCAG CGACGTGCGC GCCTCGAACA AGACTTGCGC
GCTGCCATCG GCAACGACGC ACTGAGCGTC GTCTATCAGC CGCAGTTCGA ATGCCGCACG
GGAAAGCTGA CGGGCGCCGA AGCGCTGGTG CGGTGGCATC ATCCGCATGA CGGCAGCATC
TCGCCGGAAG AGTTCATCCC GATCGCGGAA GGCAGCGACC TGATCGTCTT GCTCGGCACC
TGGGTGATGC GACGCGCATG TCGTGACGCG GCGCAATGGA ACAGGCGTGC TTCGAGCCCT
GTGAGCGTGT CCGTCAACGT GTCCGCACGA CAGCTCGGTC AACCGACCTT CACGCACGAC
GTGCTGGTCG CGCTTGCCGA AAGCGGCCTT TCCTCGCGAT CCCTCGTGCT CGAAGTGACC
GAGAGTCTGT TGATGGAAAA CGTCGACGAC GTGACGGAAC TGATGAAGAC GATCCGTGCT
GCGGGCGTCC GCCTGTCGAT CGACGACTTC GGCACCGGCT ATTCGTCCTT GTCGTATCTG
CAGAACTTTC CGCTCAACGA GTTGAAGATC GACCGCAGCT TCGTGCGATC GCTGCCGGAA
TCGGGACAGC CCATCGTCAC CGCGATCATT TCGATGGCCC ACAGTTTCGG CTTGACTGTG
GTTGCCGAGG GCGTGGAGTA TCCCGCGCAA CTCGCCTGGC TCGTCGACGC GCAATGCGAT
GTCGTGCAGG GGTATCTGAC GGGCCGGCCC ATGAGCGATG TGGCGATACA GAGACTCGTG
AGCGCGCAAC GCGAAACGGC GCTCGCTCTC ACCGTGCCGG CCGGGGACGC CTAA
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| Protein sequence | MNLHTAATPT LTRSLGRVNL IGVTVALLIS GIVLLVYQAV SLRASLTDIA RLQAAMVSEN
VSAALVFGDR RAAGDVLQHM RSLPYVESVA VFDKDDARFV LYAREGVSDA ERNEGTLESV
SHPRRLSFED VIVSAPVELN GEHLGTVVLV ATTEQMQAQF QRYASFIFGA SACALLIARF
VMTRMKSRLN DAERRLEYLA LTDPLTDLPN RRAFFEELER RIASPARSKA PLTLVLIDVD
DFKTINDTLG HGAGDELLKL VAAALKETVR AGDIVSRIGG DEFAVLASLD REPHQSQSTA
AKIVLALARP FTLQGRSVAV TASIGYSRFP DDADDVPALV SNADIALYAA KNNGKNTAVA
FEHHMVTQAQ RRARLEQDLR AAIGNDALSV VYQPQFECRT GKLTGAEALV RWHHPHDGSI
SPEEFIPIAE GSDLIVLLGT WVMRRACRDA AQWNRRASSP VSVSVNVSAR QLGQPTFTHD
VLVALAESGL SSRSLVLEVT ESLLMENVDD VTELMKTIRA AGVRLSIDDF GTGYSSLSYL
QNFPLNELKI DRSFVRSLPE SGQPIVTAII SMAHSFGLTV VAEGVEYPAQ LAWLVDAQCD
VVQGYLTGRP MSDVAIQRLV SAQRETALAL TVPAGDA
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