| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_5027 |
|---|
| Symbol | |
|---|
| ID | 6246524 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 2123338 |
|---|
| End bp | 2124873 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642596756 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001861163 |
|---|
| Protein GI | 186473821 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00146461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.392171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACGA GATTTCCCGC GATAGGCTTC GTTCTCGGCA CGCCGGCGCG CCGGCAGAAC
ACCGTCAGCG ATACCGTGCG CGCGTCGCTG CTGTCGACCG CGTTCGACAA CGCTCACCCG
CTCTTCATGG CGGGCCTCGC GAGCGCGTTC GTCGCGCTGG TTGCATATTG CAGGCTGCAT
GCCGCCTGGG CGGCCATCTG GCTCGGTGTC GACGTATCGA TCCTCGCGGC GCGGCTGCTG
TGCATCGGGG CGTACGAAAG ACGAAACCGC GCGAGCGCCC GGCATCCCGA CGCGTGTGCG
GCGCGTTATG CGCCGCTCTG CCTCCTGGCG ACGCTCGTGC TCGGTCTGGG CACAATGAGC
TGCGTGATCT CGCCCGACCG CCAGCTGGCC GCGCTCGCGA TCATGGTGAC AGCGGGTATC
CTGGGCGGAA TCGGATCGCG TAATGCCGCC CTGCCCCGGC TCGCCATTGC GCAGATCGTG
CTGGGCGCGG TTCCGATCGG CATCGGCGCG ATCGCTGCGC CGAGCCGCGG CTCGTGGATA
CTCGTGCCGC CGCTCGCGGC CTATCTCGTC GCGATGGTGT CCATCGTCTG GCGGCATTAC
GACGGCCTGC TCGCGCTGAT GTCGGCAGAG CAGCGCCACG CCGAACTGGC AGCGCGTTTC
GACGCGGCGC TGGCGCACAT GCCGCACGGC CTCTGCACCA TCGATACGGC GGGAAAAGTG
GTGATCGCGA ACCGGCGCAC GGCCGAGCTG TTCGGCGCAC GCGTCGAGCG GTTGAAACTC
GACGTGCCGC TGCCCGAATT CATCGGACAC GTGGGACTTG CGCACTTCGA TGGTCCGGCG
TTCCGCGCGC AGATCGAAGA GCGGTGCGCG GCGTGGCTGC ATGGCGAGCG CCGCGCGTTC
GACCTCGAAT TGCGCGACGG ACGGCATCTC GAGATCACAC GCAATCCGGT ACCGGATGGA
AGCGCCGTGA TCATCATCGA GGATGTGACG CAACGCCGGG AAAGCGAAGC CAGGATCCTG
CACCTCGCCC GCCACGATCC GCTGACGGGA CTCGCCAACC GCCGCGAATT CCACGACCGT
TTGAAGCTCA TGCTGAGCGC GGCCCCGGCG TCGGCCGCGT CACGTGCGGC CGTGTTCTAC
CTCGATCTCG ACGGTTTCAA GAACGTCAAC GACAACCTCG GTCATGGCGC GGGCGATGAA
GTGCTCACGA TGGTGGCGGC GAGGCTCGAG CAGACGCTGC GGGACGGCGA GCTGGCGGCA
AGGCTCGGCG GCGACGAGTT CGCTGTCATC GTCCGCGATT CGACGCCGCT CGTGGTCGCC
ACCATCGCGC GGCGGATCAT CCGCGTCGTC AGCCGGCCCT ATCGACTGGC TGCGGGCAGG
ACGGTGTCGA TCGGCACCAG CATCGGCATC GCGTTGTCTG CTCCCGATGA CGCCGTCGAC
GCACTCATCT CCCGCGCTGA CGAAGCGCTT TACGCCGCAA AACAGGCGGG AAAAGGCACG
TTCCGCGTGT CGCAGCGCGA TGGTGTGCTG CTGTAG
|
|---|
| Protein sequence | MRTRFPAIGF VLGTPARRQN TVSDTVRASL LSTAFDNAHP LFMAGLASAF VALVAYCRLH
AAWAAIWLGV DVSILAARLL CIGAYERRNR ASARHPDACA ARYAPLCLLA TLVLGLGTMS
CVISPDRQLA ALAIMVTAGI LGGIGSRNAA LPRLAIAQIV LGAVPIGIGA IAAPSRGSWI
LVPPLAAYLV AMVSIVWRHY DGLLALMSAE QRHAELAARF DAALAHMPHG LCTIDTAGKV
VIANRRTAEL FGARVERLKL DVPLPEFIGH VGLAHFDGPA FRAQIEERCA AWLHGERRAF
DLELRDGRHL EITRNPVPDG SAVIIIEDVT QRRESEARIL HLARHDPLTG LANRREFHDR
LKLMLSAAPA SAASRAAVFY LDLDGFKNVN DNLGHGAGDE VLTMVAARLE QTLRDGELAA
RLGGDEFAVI VRDSTPLVVA TIARRIIRVV SRPYRLAAGR TVSIGTSIGI ALSAPDDAVD
ALISRADEAL YAAKQAGKGT FRVSQRDGVL L
|
|---|
| |