| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3678 |
|---|
| Symbol | |
|---|
| ID | 6245220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 626469 |
|---|
| End bp | 627725 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642595448 |
|---|
| Product | diguanylate cyclase with GAF sensor |
|---|
| Protein accession | YP_001859859 |
|---|
| Protein GI | 186472517 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.313961 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACTGC GCGTCCGGTG TATAAAGCGG ACGTCGTTGC GGTTGGTTGA AAGCAAGAAA
CAGGTTGCAA CCGGGGTCGC AACGGTCGGC CTCAAGCAAA CGCACATCGA GGCCGATAAC
CAGACGTTGG GCCCCGCAGC GGGCCGCAAT GCAACGGCCC CAATGAGCAC AACACACACG
CCCCACTCCG TCCGTCTTCG CGCACTCGTC GATACAGTGC AACGCAATGA ACGCACGTTG
CGCCGCTTCC AGGATGTCGA ACTTCATCTG ATCCGCGCAC AGGATTTTCA GGCGCTTTGC
AGCGTGCTGT TCGACTATCT GCCGCGCGAG TTCGGACTGG AGCGTGTGAT GCTCTGGCTC
AACGACACGT TGCCGCTGCT CCATGAGATG GCCTCGCGTC ACGTGACTCC GCCGACGGCC
GGAAGCCCGG CAGGGTCGCT GAATACGTCG CGTGAAACCG GCGACGCGGC GACGCGACTG
TGTGCACAAG GACGTCCGTG GCTCGGTGCG TGCGCGTCGA TGGACGATGC GGCGCGCGAC
GCGCTCCGTG CCGGCGACAT GCCGGCGGCC AGCATCGCGC TGCTGCCGCT CGCCGCGAAC
GGTCTGTTGA GCGGCTATCT GTGCCTCGGC AGCGACAACG CAAGCCGTTT CGCCGCAGGG
ATGGCGACCG ACATGCTGGA ACGCTTCGCC GTGATCGTGG CGGCGAGCCT CGACAATGTC
GCGCATCGCG AGCAGCTCGA ACGGCTCGGC GCAACCGATG CGCTGACGGG TCTGCCCAAC
CGCCGCTATT TCGACGAGCG TTTGCGCGAG GAGACGATGC GTGCGTCGCG TTACCGTTTG
CCGCTCGGCT GTCTCTTCAT CGATATCGAC GGCTTCAAGC CGATCAACGA TGCGCACGGC
CATGCAATCG GCGACCGCGC GCTTGCGCTG GTCGGCGCAT GTCTGCGCAA GCAGACGCGC
CTCGGCGACA CTATCGCGCG ATACGGCGGC GAAGAATTCG CCGTGCTGCT GCAAGGTGAC
CTGAAGGACT CGCTGGCTGT GGCCGAACGC ATGCGCACGG CCGTCGCGCA ACTCGAGCTG
CACGACAATG GCGGCGCGCG CATTCCGCTT ACGGTGTCGA TTGGCGCCTC TGCACATGCG
ATGCAGTCTG GGTCTGATCT CGACCGGCTC GGGCGCACGC TCGTCGACGA AGCGGACCGC
GCGATGTACA AGGCAAAAGC CGACGGACGC AATCGCGTGG TGACGCTCGT CACCTGA
|
|---|
| Protein sequence | MKLRVRCIKR TSLRLVESKK QVATGVATVG LKQTHIEADN QTLGPAAGRN ATAPMSTTHT
PHSVRLRALV DTVQRNERTL RRFQDVELHL IRAQDFQALC SVLFDYLPRE FGLERVMLWL
NDTLPLLHEM ASRHVTPPTA GSPAGSLNTS RETGDAATRL CAQGRPWLGA CASMDDAARD
ALRAGDMPAA SIALLPLAAN GLLSGYLCLG SDNASRFAAG MATDMLERFA VIVAASLDNV
AHREQLERLG ATDALTGLPN RRYFDERLRE ETMRASRYRL PLGCLFIDID GFKPINDAHG
HAIGDRALAL VGACLRKQTR LGDTIARYGG EEFAVLLQGD LKDSLAVAER MRTAVAQLEL
HDNGGARIPL TVSIGASAHA MQSGSDLDRL GRTLVDEADR AMYKAKADGR NRVVTLVT
|
|---|
| |