| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3310 |
|---|
| Symbol | |
|---|
| ID | 6244741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | + |
|---|
| Start bp | 244697 |
|---|
| End bp | 246415 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642595100 |
|---|
| Product | choline dehydrogenase |
|---|
| Protein accession | YP_001859512 |
|---|
| Protein GI | 186472170 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.903723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCGA AAGAGTACGA CTACATCATC ATCGGCGCGG GATCGGCGGG CAACGTGCTC
GCCACACGCC TGACGGAAGA CCGCGACGTG ACCGTGCTGC TGCTGGAAGC GGGCGGCCCC
GACTATCGCT TCGACTTCCG TACGCAGATG CCCGCTGCGC TCGCGTATCC GTTGCAGGGC
AGACGCTATA ACTGGGCTTA TGAAACGGAC CCCGAGCCGT TCATGAACAA CCGGCGCATG
GAATGCGGAC GCGGCAAGGG CCTGGGCGGT TCGTCGCTGA TCAACGGCAT GTGCTATATC
CGCGGCAACG CGCTCGACTA CGACGGCTGG GCGGAACGAA AAGGCCTTGA AAACTGGACC
TATCTGGATT GCCTGCCGTA TTTCCGCAAG GCGGAAACGC GCGATGCCGG CGCGAACGAC
TACCACGGCG GCGACGGTCC CGTGCATGTG ACGACCAGCA AGCGCGGCGT GAATCCGCTC
TTCGAAGCGA TGGTCGAAGC GGGCGTGCAG GCGGGCTATC CGCGTACCGA CGACCTCAAC
GGCTATCAGC AGGAAGGCTT CGGCCCGATG GATCGCACGG TGACGGCCAA CGGCCGCCGC
GCGAGCACCG CGCGCGGCTA TCTGGACCAG GCGAGGCCGC GCCCCAATCT CACGATCGTC
ACCTACGCGA CCACCGACCG GATTCTGTTT AGCGGCAAGC GTGCGCAAGG CGTCGTGTAT
CTGGATGGAC AGGCGCAGAT CACAGCCCAT GCACGGCGCG AAGTATTGCT GTGCAGCGGC
GCAATTGCGT CGCCGCAGAT CCTGCAGCGG TCGGGCGTCG GCCCCGGTGG ATGGCTGCGC
GATCTCGACA TTCCCGTCGT GCTCGATCTT CCCGGCGTCG GCCAGAATCT GCAGGATCAC
CTCGAGATGT ACATGCAGTA CGAGTGCAAA GAACCCGTGT CGCTCTACCC TGCGCTGCTG
CTGCGCAATC AGCCCGCGAT CGGTATCGAA TGGATGCTGA AGGGCACGGG CATCGGCGCG
AGCAATCACT TCGAAGCGGG CGGCTTCATT CGCACTCGCG ACGACGACCC GTGGCCGAAC
ATCCAGTACC ACTTCCTGCC CGTCGCGATC AACTACAACG GTACGAACGC GATCAAGATG
CACGGCTTCC AGGCGCACGT CGGTTCAATG CGCTCGCCGA GCCGTGGACG CGTGAAGCTG
CGTTCGCGCG ACCCGCGCGA GCATCCGTCG ATTCTCTTCA ACTACATGGC GGAAGCCCTC
GATTGGCGCG AGTTTCGCGA CGCGATCCGC ATCACGCGCG AGATAATCGC GCAGCCTGCG
CTCGACCGGT TTCGCGGCCG CGAACTGAGC CCCGGCGCCG AGTTGCAAAG CGACGCGCAG
ATCGATGCGT TCGTGCGGGC ACGAGCGGAA ACGGCCTACC ATCCGTCGTG CTCGTGTGCG
ATGGGTTACG ACGACATGGC CGTCGTCGAC GGCGAAGGAC GCGTGCATGG ACTCGAAGGC
CTGCGCGTGG TCGATGCGTC CATCATGCCG CGCATCACGA CGGGCAACCT GAATGCGCCA
ACCATCATGC TCGCAGAGAA GATTGCCGAT CGGATTCGCG GACGCGCGCC GCTCGCGCGT
TCGACCGCAC CGTACTATGT CGCAAACGGC GCACCGGCGC GCGGCGCGAA GCATGTTGAG
CACGCACCGG CACCGAGCGT GGCCGCGCAT ACACATTGA
|
|---|
| Protein sequence | MAAKEYDYII IGAGSAGNVL ATRLTEDRDV TVLLLEAGGP DYRFDFRTQM PAALAYPLQG
RRYNWAYETD PEPFMNNRRM ECGRGKGLGG SSLINGMCYI RGNALDYDGW AERKGLENWT
YLDCLPYFRK AETRDAGAND YHGGDGPVHV TTSKRGVNPL FEAMVEAGVQ AGYPRTDDLN
GYQQEGFGPM DRTVTANGRR ASTARGYLDQ ARPRPNLTIV TYATTDRILF SGKRAQGVVY
LDGQAQITAH ARREVLLCSG AIASPQILQR SGVGPGGWLR DLDIPVVLDL PGVGQNLQDH
LEMYMQYECK EPVSLYPALL LRNQPAIGIE WMLKGTGIGA SNHFEAGGFI RTRDDDPWPN
IQYHFLPVAI NYNGTNAIKM HGFQAHVGSM RSPSRGRVKL RSRDPREHPS ILFNYMAEAL
DWREFRDAIR ITREIIAQPA LDRFRGRELS PGAELQSDAQ IDAFVRARAE TAYHPSCSCA
MGYDDMAVVD GEGRVHGLEG LRVVDASIMP RITTGNLNAP TIMLAEKIAD RIRGRAPLAR
STAPYYVANG APARGAKHVE HAPAPSVAAH TH
|
|---|
| |