| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_3211 |
|---|
| Symbol | |
|---|
| ID | 6244894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010623 |
|---|
| Strand | - |
|---|
| Start bp | 122966 |
|---|
| End bp | 124141 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642595005 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001859417 |
|---|
| Protein GI | 186472075 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.774727 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT CGCTTCTCGC TCTGGCTGCT TTGGGCGTCT TTACTGGCGC ACATGCGCAG
AGCAGTGTGA CGTTATACGG TGTAGTCGAT GCCGGTATCG CTTATACCAA CAACGTAGGC
GGGCAACATA ATTTCTTTAC CAGCAGCGGC AACCTTCAGG GTAGTCGTTG GGGGTTGCGC
GGCAAGGAAG ACTTGGGCAG TGGTCTGACG GCTCTGTTCG TATTGGAAAA TGGCTTCAAC
GTGTTCAACG GCACGTTGGG GCAAGGCGGC GACATGTTTG GTCGTCAAGC GTATGTCGGT
CTTTCGTCTT CCCAGTTTGG CACAGTCACG CTGGGACGTC AGTACGACTC CGTAGTCGAC
TACACCGGTC CGCTTGAAGT TGGCAGCCAG TGGGGATCGT ACTTCGCCGC GCACCCGGCC
GATCTTGACA ACATGAACAA CACGAACCGT GTGAACAACG CGATCAAGTT CACGAGCGCG
AACTATGCAG GCTTCACGTT CGGAGGTCTG TACAGTCTCG GTGGTAATGC GGGCCAGTTC
AACCGCAACC AGATCTGGTC GGTCGGAGCA GGCTATGCCA ACGGCCCGCT GCAGTTGGGT
GCTGGCTACC TGAACGTGAA GGATCCGAAC TATTCGTTCT GGGGAAACAA CGCCAATTCG
CGCAGCACCA CGACCACCCC TTCTGCCTCA AACTTCCCGA GCAGCCGTGT GATATCGGGC
TTTGCGTCGG CGCACACGCT GGAGGTAATT GCTGTCGCGG GCGCATACAC GTTTGGCGCT
GCAACTATCG GGGCAACGTA TAGCAACACG CAATATAAGG ATGTCGGCAC CGAGTCGGGC
GCGGGACTGA ACCCGGTCGG CTACAAGGGA GGTTCGGGCA AATTTCACAA TGCCGAACTC
AACTTTAAGT ATCAGCTGAC TCCGTCACTG CTTCTCGGCG CGGCCTATGA CTATACGAAA
GGCTATGGCT TGAGTGACGC TAAGTACCAC CAGGCTATGT TGGGCGCCGA CTACTTTCTG
TCGAAGCGCA CTGATGTGTA CGTCGATGGC GTCTACCAAC ACGCGAGCGG AACAGACTCG
ACGCAACACG CAGCTGTCGC AAACATCAAC CAGTTGTCGC CGTCGTCAAC GTCAAACCAG
GTTGCGGCGG TCGTCGGTAT CCGTCATAAG TTCTAA
|
|---|
| Protein sequence | MKKSLLALAA LGVFTGAHAQ SSVTLYGVVD AGIAYTNNVG GQHNFFTSSG NLQGSRWGLR
GKEDLGSGLT ALFVLENGFN VFNGTLGQGG DMFGRQAYVG LSSSQFGTVT LGRQYDSVVD
YTGPLEVGSQ WGSYFAAHPA DLDNMNNTNR VNNAIKFTSA NYAGFTFGGL YSLGGNAGQF
NRNQIWSVGA GYANGPLQLG AGYLNVKDPN YSFWGNNANS RSTTTTPSAS NFPSSRVISG
FASAHTLEVI AVAGAYTFGA ATIGATYSNT QYKDVGTESG AGLNPVGYKG GSGKFHNAEL
NFKYQLTPSL LLGAAYDYTK GYGLSDAKYH QAMLGADYFL SKRTDVYVDG VYQHASGTDS
TQHAAVANIN QLSPSSTSNQ VAAVVGIRHK F
|
|---|
| |