Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_2848 |
Symbol | rpoB |
ID | 6244331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010622 |
Strand | - |
Start bp | 3192571 |
End bp | 3196677 |
Gene Length | 4107 bp |
Protein Length | 1368 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642594644 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001859066 |
Protein GI | 186477596 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATATT CCTTCACCGA GAAGAAGCGT ATTCGCAAGA GTTTCGCGAA GCGCCCCATC GTTCACCAAG TACCTTTCCT GCTGGCTACC CAGCTTGAAT CATTCAGCAC GTTTCTGCAA GCAGAAGTGC CAACGGCGCA GCGCAAACCG GAAGGTCTGC AGGCTGCGTT CACATCGGTT TTTCCCATTG TTTCGCATAA CGGCTTCGCT CGTCTCGAGT TCGTCAGCTA CATGCTGTCG CCGCCGGCAT TCAATATCAA GGAATGTCAG CAGCGCGGCC TGACTTACTG CTCGGCGCTG CGTGCCAAGG TGCGTCTCGT TCTGCTCGAC AAGGAATCGC CGAGCAAGCC CGTCGTCAAG GAAGTGAAGG AGCAGGAAGT GTACATGGGC GAAATTCCGC TCATGACGCC GACCGGCTCG TTCGTCATCA ACGGCACGGA ACGTGTGATC GTGTCGCAGC TGCACCGTTC GCCTGGCGTG TTCTTCGAGC ATGACAAGGG CAAGACGCAC AGCTCCGGCA AGCTGCTGTT TTCCGCACGT ATCATTCCTT ACCGCGGCTC GTGGCTCGAC TTCGAATTCG ACCCGAAGGA CGTGCTGTAC TTCCGCGTCG ACCGTCGTCG CAAGATGCCC GTCACGATCC TGCTGAAGGC AATCGGCCTG ACGCCGGAAC AGATCCTCGC GAACTTCTTC GTGTTCGACA ACTTCACGCT GATGCCGGAG GGCGCGCAGA TGGAGTTTGT GCCGGAGCGT CTGCGTGGTG AAGTCGCGCG CTTCGACATC ACGGACCGCG ATGGCAAGGT CATCGTCCAG AAGGACAAGC GTATCAACGC GAAGCACATT CGCGACCTCG AAAACGCGAA GACGAAATAC ATTTCGGTTC CCGAAGACTA TCTGCTCGGC CGTGTGCTCG CGAAGAATGT CGTCGACGGC GATACGGGCG AAGTGATCGC GAACGCGAAC GACGAAGTCA CGGAAAGCGT GCTCGACAAG CTGCGCGAAG CGAAGATCAA GGACATCCAG ACGCTCTACA CGAACGATCT GGATCAGGGT CCGTACATTT CGTCGACGCT GCGTATCGAC GAAACGGCCG ACAAAATGGC CGCTCGCATT GCGATCTACC GCATGATGCG CCCGGGCGAG CCGCCGACGG AAGAAGCCGT CGAGGCGCTG TTCAACCGTC TGTTCTACAG TGAAGAAGCC TACGACCTGT CGAAGGTGGG TCGTATGAAG TTCAACCGCC GCGTTGGCCG CGATGAAATC GTGGGCCCGA TGACGCTGCA GGACGACGAC ATCCTCGCGA CGATCAAGAT CCTGGTCGAG CTGCGTAACG GCAAGGGCGA AGTGGACGAC ATCGACCACC TCGGCAACCG TCGTGTGCGC TGCGTCGGCG AACTGGCGGA GAACCAGTTC CGCGCCGGTC TCGTGCGTGT CGAGCGCGCT GTGAAGGAAC GCCTCGGCCA GGCCGAAAGC GAAAACCTCA TGCCGCACGA TCTGATCAAT TCGAAGCCGA TTTCATCGGC GATTCGCGAG TTCTTCGGTT CGTCGCAGCT GTCGCAGTTC ATGGACCAGA CCAACCCGCT GTCGGAAATC ACCCACAAGC GCCGCGTGTC GGCACTTGGC CCGGGCGGTC TGACGCGCGA GCGCGCTGGC TTTGAAGTCC GCGACGTGCA CCCGACGCAC TATGGCCGTG TGTGTCCGAT CGAAACGCCG GAAGGTCCGA ACATCGGTCT GATCAACTCG CTGGCACTGT ACGCGCACCT GAACGAATAC GGCTTCCTCG AAACGCCGTA TCGCAAGGTG ACGGACGGCA AGGTCACGGA CCAGATCGAC TATCTGTCGG CAATCGAAGA AGGCCGCTAC GTGATCGCTC AGGCGAACGC CGCTGTGGCA GAAGACGGCA CGCTGACCGA CGAACTCGTG TCTTCGCGTG AAGCGGGCGA AACGTTGATG GTGACGCCAG ACCGCATCCA GTACATGGAC GTGGCGCCGT CGCAGATCGT GTCGGTGGCG GCATCGCTGA TTCCGTTCCT CGAGCACGAT GACGCGAACC GTGCACTGAT GGGCTCGAAC ATGCAGCGTC AGGCTGTGCC GTGTCTGCGT CCGGAAAAGC CGGTTGTCGG TACGGGTATC GAGCGTACGG TGGCGGTGGA CTCTGGCACG ACCGTGCAGG CACTGCGCGG CGGTGTGGTC GATTACGTCG ACGCTGGCCG TATCGTGATT CGTGTGAACG ACGACGAAGC GGTTGCCGGT GATGTCGGTG TCGACATCTA CAACCTGATC AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GTCCGATCGC GAAGGTCGGC GACAAGGTTG CGCGCGGCGA CGTGCTGGCT GACGGCGCTT CGACTGACCT CGGCGAACTG GCGCTTGGCC AGAACATGCT GGTCGCGTTC ATGCCGTGGA ACGGCTACAA CTTCGAAGAC TCGATCCTGA TCTCGGAAAA GGTCGTTGCG GACGATCGCT ACACGTCGAT CCACATCGAA GAACTGAACG TCGTGGCTCG CGACACGAAG CTCGGACCGG AAGAAATCAC GCGCGACATT TCGAATCTGG CTGAAGTGCA GCTTGGCCGT CTCGACGAGT CGGGCATCGT GTACATCGGC GCGGAAGTCG AAGCGGGCGA CGTGCTGGTC GGCAAGGTCA CGCCGAAGGG CGAAACCCAG CTGACGCCGG AAGAAAAGCT GCTGCGCGCG ATTTTCGGCG AGAAGGCATC GGACGTGAAG GACACGTCGC TGCGCGTGCC GTCGGGCATG AGCGGCACGG TCATCGACGT GCAGGTGTTC ACGCGTGAAG GCATCCAGCG CGACAAGCGT GCGCAACAGA TCATCGACGA CGAACTGAAG CGCTATCGCC TCGACCTGAA CGACCAGCTG CGCATCGTGG AAGGCGACGC GTTCCAGCGT CTCGCACGCA TGCTCGAAGG CAAGGTCGCG AACGGCGGTC CGAAGAAGCT GGCAAAGGGC ACGAAGATCG AACGCGCTTA CCTGGAAGAT CTCGATCACT ACCACTGGTT CGACATCCGC CTCGCGGACG AAGAAGCAGC GGCGCAGCTC GAAGCGATCA AGGATTCGAT CGAACAGAAG CGTCACCAGT TCGACCTCGC GTTCGAAGAG AAGCGCAAGA AGCTCACGCA AGGCGACGAA CTGCCGCCGG GCGTGCTGAA GATGGTCAAG GTGTACCTGG CAGTCAAGCG CCGCCTGCAG CCTGGCGACA AGATGGCAGG TCGTCACGGT AACAAGGGTG TCGTGTCGAA GATCGTTCCG ATCGAAGACA TGCCGTACAT GGCCGATGGC CGTCCCGCAG ACGTCGTGCT GAACCCGCTC GGCGTTCCGT CGCGGATGAA CGTGGGTCAG GTTCTCGAAG TTCATCTGGG TTGGGCCGCG AAGGGTCTGG GCTGGCGTAT CGGCGAAATG CTGCAGCGTC AGGCCAGGAT CGAGGAAGTT CGCGCGTTCC TGACCAAGAT TTACAACGAG TCGGGCCGCG CGGAAGAGCT GGAAAGCTTC TCCGACGACG AGATCCTCGA ACTGGCGAAG AACCTGCGCG AAGGCGTGCC GTTCGCAACG CCGGTGTTCG ACGGTGCGAC GGAAGAGGAA ATGTCCAGCA TGCTGGATCT CGCCTTCCCG GACGACATCG CGCAGAACCT CGGCATGACG AAGTCGAAGA ACCAGGTGCG TCTGTATGAC GGCCGCACGG GTGAAGCCTT CGAACGTACG GTGACGGTCG GCTACATGCA CTACCTGAAG CTGCACCACC TGGTCGACGA CAAGATGCAC GCGCGTTCGA CGGGTCCGTA CTCGCTGGTC ACGCAGCAGC CGCTGGGTGG TAAGGCGCAG TTCGGTGGTC AGCGCTTCGG TGAAATGGAA GTGTGGGCGC TCGAAGCGTA CGGCGCATCG TACGTGCTGC AGGAAATGTT GACGGTCAAG TCGGACGACG TGACAGGCCG GACCAAGGTT TACGAGAACC TGGTCAAGGG CGATCACGTC ATCGACGCGG GCATGCCGGA ATCCTTCAAC GTGCTGGTGA AGGAAATCCG CTCGCTCGGT ATCGACATCG ACCTCGACCG CAACTAA
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Protein sequence | MQYSFTEKKR IRKSFAKRPI VHQVPFLLAT QLESFSTFLQ AEVPTAQRKP EGLQAAFTSV FPIVSHNGFA RLEFVSYMLS PPAFNIKECQ QRGLTYCSAL RAKVRLVLLD KESPSKPVVK EVKEQEVYMG EIPLMTPTGS FVINGTERVI VSQLHRSPGV FFEHDKGKTH SSGKLLFSAR IIPYRGSWLD FEFDPKDVLY FRVDRRRKMP VTILLKAIGL TPEQILANFF VFDNFTLMPE GAQMEFVPER LRGEVARFDI TDRDGKVIVQ KDKRINAKHI RDLENAKTKY ISVPEDYLLG RVLAKNVVDG DTGEVIANAN DEVTESVLDK LREAKIKDIQ TLYTNDLDQG PYISSTLRID ETADKMAARI AIYRMMRPGE PPTEEAVEAL FNRLFYSEEA YDLSKVGRMK FNRRVGRDEI VGPMTLQDDD ILATIKILVE LRNGKGEVDD IDHLGNRRVR CVGELAENQF RAGLVRVERA VKERLGQAES ENLMPHDLIN SKPISSAIRE FFGSSQLSQF MDQTNPLSEI THKRRVSALG PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLINS LALYAHLNEY GFLETPYRKV TDGKVTDQID YLSAIEEGRY VIAQANAAVA EDGTLTDELV SSREAGETLM VTPDRIQYMD VAPSQIVSVA ASLIPFLEHD DANRALMGSN MQRQAVPCLR PEKPVVGTGI ERTVAVDSGT TVQALRGGVV DYVDAGRIVI RVNDDEAVAG DVGVDIYNLI KYTRSNQNTN INQRPIAKVG DKVARGDVLA DGASTDLGEL ALGQNMLVAF MPWNGYNFED SILISEKVVA DDRYTSIHIE ELNVVARDTK LGPEEITRDI SNLAEVQLGR LDESGIVYIG AEVEAGDVLV GKVTPKGETQ LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGIQRDKR AQQIIDDELK RYRLDLNDQL RIVEGDAFQR LARMLEGKVA NGGPKKLAKG TKIERAYLED LDHYHWFDIR LADEEAAAQL EAIKDSIEQK RHQFDLAFEE KRKKLTQGDE LPPGVLKMVK VYLAVKRRLQ PGDKMAGRHG NKGVVSKIVP IEDMPYMADG RPADVVLNPL GVPSRMNVGQ VLEVHLGWAA KGLGWRIGEM LQRQARIEEV RAFLTKIYNE SGRAEELESF SDDEILELAK NLREGVPFAT PVFDGATEEE MSSMLDLAFP DDIAQNLGMT KSKNQVRLYD GRTGEAFERT VTVGYMHYLK LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK SDDVTGRTKV YENLVKGDHV IDAGMPESFN VLVKEIRSLG IDIDLDRN
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