Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_1932 |
Symbol | |
ID | 6243421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010622 |
Strand | - |
Start bp | 2174817 |
End bp | 2177573 |
Gene Length | 2757 bp |
Protein Length | 918 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642593720 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001858157 |
Protein GI | 186476687 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCATGGC TTGACCAACC CCGTACGCTG GAGATAGTCA GCGCGGGCCT GCCGAAGTGG CAGGATGAAT GCCTCTTCAC GGTATCGCGC CTGACCGGCA CCGAAAAGCT CGGCAGGCTC TACGACTACA CCGTCGAGAT TGCGACGAAG GACGATATCG GCCTGACCGT GCATGAGGCA AGAGCCATGG TCAAGGTGGA CGAACTGGTC GGCAAGCAGG TGACGGTGAA GATCGCCACC GAGGGTAGCG GCACCTACGA GACGGGAACA ATCGGCGTGT CCCCGTCGAT CAATATCGGC GCGGGCGTGC GCGAGATCAC CGGCCTGATC GTCTCGGCGC AGTGCGTCGG CTCGGATACG CGGCGGGCGT TCTACCGCTT GAGGATTCGC CCATGGCTCT TTTTAGCGAC CCTCAACCAG GACTCAAGAA TCTTCCAGGA CCTCACGGTC AAGGAAATCT CCGAAACGAT CCTGAAAAAG TATCCGTTTC ACTATGAACT GCGCCTGGCC GGCCCCGGCT TTGGCCGGCA GTATCCGAAG CGCGACTACC AGCGCATGTA CTGGGAGAGC GACTGGGGCT ATCTCAATCG CCTGTGGCAG GAATGGGGCA TCACGTTCTT CTACGATGGC CCGACGCTCG TGCTGTGCGA TTCGACCGCC GCCTACAAGA AGCACGGCCC CGCGTATGCA ACGCTGCAAT ACCAGGACCG CGACGGCCAG CGCATCGATG AGGAACATGT ATACCAGTTC GAGATCGCAC GCGCCCTGAC CACGGGCAAG GTCAGCGTCA CCGACTACGA CTACACGCAG TCGCGCGCGA ATCTCGCCGC GAAGGATTCG GACTACCGCG AGCGCGCGAA CGACAACATC GAGCACTACG CCTGGGGCGA CTACTCGCAG CCGCTGGCCG GGGCGATGGG GACCGCCGCG CAGCCCAATG AGGTGGACTT CGAGGGCGAG CACCTGGCAC GCGTGCGGCT GGAAGCAAAA CGGGCGAAGA GTCTGCGCGG CAAGGGGCGC GGCAACATGC GCGGGCTGAG GGTGGGCTAT ACGTTCCACC TGGAAGGCTA TCCGCTCGCA CCGGGCAATG GCGAATACCT GGTCGTCGCG ACGAAGATCG AGATCGTCAA CAACGACACG GTGACGAACC GGGGTGCGCT GCAACGTCAG TACACGTGCG ACACGCAGTT CACGGTGCAG CCCGCCAATA CGTATTTCCG CACGCCGCAG AAGGCGAAAA AACCGCGCTC GCACGGCGAG GTGGCGATTG TGACGGGCTA TTCGGATTCA AAAATCTGGA CCGACAGGTA TGGCCGCGCG AAGGTCTGGT TCCCGTGGGA TCGCGAGGGC CAGCAGGACC AGGACTCAAG CTGCTGGGTG CGGGTGTCGT CGCCATGGCA GGGTGCGAAC TACGGCGCGA TCTACATTCC GCGCGCGGGC CACGAGGTGG TGATCGGGTA TCAGGACAAT GATCCGGACA AGCCGTATAT CGCGGGACGG CACGTGAACC AGTTCCACGA ACCGCCGTGG CCGCTGCCCG CGAACCAGGC GCTTTCGGGC TGGCTGAGCG AGGACCTGGA GGGGCCAACG ACCAACAGCG TTGTCACCGA CGATACACCG GGCAAGCTCC AGGTGCAGGT GGCAAGCGAC CACGCGCAGT CGCGTCTGGT GCTGGGCAGC AACACGCGCA TCGACCGGCA CCAGGGCCGC AGCGAGGCAC GTGGCGAGGG GTTCGAACTG GCGACCGAGG CGCATGGCGT GGCGCGCGCA AACCGGGGCC TGCTGCTGAC GACCGAGACG CGCGCTGGCG CGGGTGCGCC CGTAAAGGAC ATGGGCGAGA CGGTGCAGCG GCTCACGCAG GCGCGCGAAC TGCACGAGGA CATGGCGCAG TTCGCCAGGC GGCACAAGGC GCAGGACGCG CAGGTGAGCC AGGGCGACGC AGCGGCGGGC ATGAAGGCGC AGAACGACGC GATCAAGGGC GGCGCGAAAA GCACCGCGAA CCCGTCGCCG GAGATGACGC GGCCCGACCT CGTACTGGCG AGCGCGGCGG GCATCGCAGC GACCGCCAGC GACAGCATGC ATCTGCACAG CCAGAACGAT CACGCGATCA CGGCGGGCCG CGACGTGAGC ATTGCGTCGG GCCGCTCGTG GCTGGCGTCG GTGCGGGGTG CCCTCTCGTT CGTGACAGGG CTTGGCATCC GCCTGTTTGC GGCGAAGGGC AAGGTCGAGA TTCAGGCCCA AGGTGACGCA ATGGCGCTGG CGGCCCTGAA GGACCTCACG ATCAGCAGCA CGAACGGAAA AATCATTATC ACCGCCGCGA AGGAAATCTG GATTGGTGCG GGTGGCTCGT ATATCCAGAT CAACGGTAGC GGCATTGTGA ACGGCTCGCC GGGACCGATT CTGGAGAAGG GGGCGAAGTG GAGTAAGTCG GGGGCGGCTT CAAAGCGCTT ACCGTTGCCG CCAATGCCCA TCATGTCACT GATGCAGAGC CCTGCTGAGT TGTATTTGCA GAAGTTTGAT GTCGGTACGA TCGCTGAAAA CCAGGGAGAT GGACTTACCG TCGCCAACCA GCCGTATCGC ATCTATCTGC CGGATGGCAC GCTCAAGCAA CAAGGCATGC TGACCGATGG TGCAACGTTG ATCGTCAGCA CGGCAGAAGC GGTGAAGGTC AGGTGTGAGA TCGGGGCGGG AGATTGGGGC GTGGTCGAAG ACGCTTACGA CCACCACGAA CTGGAAGATG ACTCCGCGCA GGCTTGA
|
Protein sequence | MSWLDQPRTL EIVSAGLPKW QDECLFTVSR LTGTEKLGRL YDYTVEIATK DDIGLTVHEA RAMVKVDELV GKQVTVKIAT EGSGTYETGT IGVSPSINIG AGVREITGLI VSAQCVGSDT RRAFYRLRIR PWLFLATLNQ DSRIFQDLTV KEISETILKK YPFHYELRLA GPGFGRQYPK RDYQRMYWES DWGYLNRLWQ EWGITFFYDG PTLVLCDSTA AYKKHGPAYA TLQYQDRDGQ RIDEEHVYQF EIARALTTGK VSVTDYDYTQ SRANLAAKDS DYRERANDNI EHYAWGDYSQ PLAGAMGTAA QPNEVDFEGE HLARVRLEAK RAKSLRGKGR GNMRGLRVGY TFHLEGYPLA PGNGEYLVVA TKIEIVNNDT VTNRGALQRQ YTCDTQFTVQ PANTYFRTPQ KAKKPRSHGE VAIVTGYSDS KIWTDRYGRA KVWFPWDREG QQDQDSSCWV RVSSPWQGAN YGAIYIPRAG HEVVIGYQDN DPDKPYIAGR HVNQFHEPPW PLPANQALSG WLSEDLEGPT TNSVVTDDTP GKLQVQVASD HAQSRLVLGS NTRIDRHQGR SEARGEGFEL ATEAHGVARA NRGLLLTTET RAGAGAPVKD MGETVQRLTQ ARELHEDMAQ FARRHKAQDA QVSQGDAAAG MKAQNDAIKG GAKSTANPSP EMTRPDLVLA SAAGIAATAS DSMHLHSQND HAITAGRDVS IASGRSWLAS VRGALSFVTG LGIRLFAAKG KVEIQAQGDA MALAALKDLT ISSTNGKIII TAAKEIWIGA GGSYIQINGS GIVNGSPGPI LEKGAKWSKS GAASKRLPLP PMPIMSLMQS PAELYLQKFD VGTIAENQGD GLTVANQPYR IYLPDGTLKQ QGMLTDGATL IVSTAEAVKV RCEIGAGDWG VVEDAYDHHE LEDDSAQA
|
| |