| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphy_1383 |
|---|
| Symbol | |
|---|
| ID | 6242874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phymatum STM815 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010622 |
|---|
| Strand | - |
|---|
| Start bp | 1553137 |
|---|
| End bp | 1555059 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642593165 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001857611 |
|---|
| Protein GI | 186476141 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.138715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAG GCACGCGACG GATTAACGCG CCACGCCCGG GATGGCGCAC TCTGATTCGT
CCGTGGTCGC GTATGCGTGG CACGGCGGTA TCGCGCGCCG CGTTTGCCAT GTGTCTGGGT
TCGTTCATTG CGTTGTCGCC CGCCACCGCG CAGCGTGCGC ACGCCGCCTA CGCGATCGCG
CAGTATGGTG AGCCGAAATA TCCGCGCGAC TTCAAGCACT TCGATTACGT CAACCCCGAC
GCGCCGCGCG GCGGTACGCT GGTGCTCGCG AATCCCGACC GCTCGACGAG CTTCGACAAG
TTCAATCCGT TCACGCTGCG CGGCAGTGCG GCGCCCGGCA TCGGGCTGCT GTTCGAAAGC
CTGGCGACGG GCAGCGCCGA CGAAGTCGCG TCCGCCTACG GCCTGCTCGC CGACGACATC
GACGTCGCGT CCGACGGCAT GTCGACTACC TTCCATATCA ACCCGCACGC GCGCTTTTCG
AACGGCGACT CCGTCACGGC CGAAGACGTG AAGTTTTCGT TCGACACCCT GAAGAGCCCG
AAGGCCGCGC CGCAATTCGC TGCGTATTTC GCGGATATCA CGCGCTGCGT GATCGTCGAT
CCTGCCACCG TGCGCTTCGA ATTCAAGCAG CGTGACCGCG AGTTGCCGTT GCTCGCGGGC
GGCATGCCCG TGTTTTCGCG CAAGTGGGGG GTGAAGGCGG ATGGCAGCCG GATTGCGTTC
GACCAGCTCG CGTTCGAAAA GCCGATCGGC AGCGGGCCGT ATCGGATCGA GAGCTACGAT
AACGGGCGTA CGATCACCTA CAAACGCGAC CCGAACTACT GGGGCGACAA ACTGCCCGTG
CGCGTCGGCA CCTACAATTT CGAGCGCATC AACTACAAGC TGTATTCGGA TGCGACGGCA
CGCCTCGAAG CGTTCAAGGC CGGCGAGTAC GATGCGCTCG TCGAGAACGT CGCGCGTAAC
TGGGTGCGGC GCGACGTTGG CAAGAAGTTC GACAGCGGCG AGCTGATCAA GCGCGAGTTT
GCGCATCACA ATGGCACGGG GATGCAGGGC TTTATCCTCA ATCAGCGACG GCCGCTGTTC
GGCGACGTGC GCGTGCGCAA GGCGCTCGAT CTCGCGCTCG ATTTCCAGTG GCTCGACCGG
CAGCTGTTCT ACAACCAGTA CAAGCGCATC GACAGCTACT TCGTAAATAC CGATCTGCAG
GCAAAGGGCT TGCCGTCGCC GGGGGAACTG ACGCTACTCG AACCGTGGCG CGCGAAGCTG
GAGCCTTCCG TGTTCGGCGT GCCGCCGAAG CAGCCCGACA CCGATCCGCC TGGTTCGCTG
CGGGCCAATC TGCTCGAAGC GCGCGCGCTA CTCGCGCAGG CCGGCTGGAA CTATCGTGAC
GGCGCGCTGC GCAACGCGAA GGGCGAGCCG TTCGTGTTCG AGATACTCGA CGATTCCGGG
TCATCGGCCG TGTTTGAGCC CGTGATCGCG CCGTATATCC GCAATCTGCA GAAGCTCGGC
ATCGAAGCGC GCTTTCGCGT GATGGACTTC GCGGTGTATC AGAAGCGTCT CGACGCGTTC
GATTTTGACG TCACGACGAT CCGTTTCCCC GACGTGCAGG TGCCGGGCGC CGACATGATC
GACCGCTTCG GCAGCAAGGC CGCGGATGAA CCGGGCTCCG GCAATCTGAT CGGCCTGAAG
TCGCCCGCCG TCGATTCGAT CCTGCGTGCG CTGGTCGGCG CGCAGACCCG GGAGCAACTC
GTCGATTCCG TTCACGCGCT CGATCGCGTG CTGGTCAACG GCTATTACAT GATTCCGCAT
TGGTACAGCG CGACGCACCG CGTGGCGTTC AAGCGCGGCC TCGCCTGGCC GGCGACCTTG
CCGCTGTACT ATACGGCGGA AGGCTGGATC ACTTCGATGT GGTGGTTCGC GGCGCCGCAA
TGA
|
|---|
| Protein sequence | MTTGTRRINA PRPGWRTLIR PWSRMRGTAV SRAAFAMCLG SFIALSPATA QRAHAAYAIA
QYGEPKYPRD FKHFDYVNPD APRGGTLVLA NPDRSTSFDK FNPFTLRGSA APGIGLLFES
LATGSADEVA SAYGLLADDI DVASDGMSTT FHINPHARFS NGDSVTAEDV KFSFDTLKSP
KAAPQFAAYF ADITRCVIVD PATVRFEFKQ RDRELPLLAG GMPVFSRKWG VKADGSRIAF
DQLAFEKPIG SGPYRIESYD NGRTITYKRD PNYWGDKLPV RVGTYNFERI NYKLYSDATA
RLEAFKAGEY DALVENVARN WVRRDVGKKF DSGELIKREF AHHNGTGMQG FILNQRRPLF
GDVRVRKALD LALDFQWLDR QLFYNQYKRI DSYFVNTDLQ AKGLPSPGEL TLLEPWRAKL
EPSVFGVPPK QPDTDPPGSL RANLLEARAL LAQAGWNYRD GALRNAKGEP FVFEILDDSG
SSAVFEPVIA PYIRNLQKLG IEARFRVMDF AVYQKRLDAF DFDVTTIRFP DVQVPGADMI
DRFGSKAADE PGSGNLIGLK SPAVDSILRA LVGAQTREQL VDSVHALDRV LVNGYYMIPH
WYSATHRVAF KRGLAWPATL PLYYTAEGWI TSMWWFAAPQ
|
|---|
| |