Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphy_0997 |
Symbol | |
ID | 6242495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phymatum STM815 |
Kingdom | Bacteria |
Replicon accession | NC_010622 |
Strand | - |
Start bp | 1117010 |
End bp | 1120504 |
Gene Length | 3495 bp |
Protein Length | 1164 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642592773 |
Product | transcription-repair coupling factor |
Protein accession | YP_001857232 |
Protein GI | 186475762 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGACA TCGCCGCATC CACGCAGTCC GCTTCTTCAA CCCCTGTCGC GCTGGTCAAA GCCGGCCAGC GTTTCGTGTT CGATGGCACG CACGGCTCGT CCGACGCGCT GCTGATCGCC CGCTATCACA CCGCGCACAA GGCGCAGATG CCGCTGCTCG CCGTCGTCTG CGCGAGTGCC GTCGATGCGC AGCGGCTGTC GCAGGAACTC GCGTTCTTCG CGCCGGATGC GCGCATCCGT CTGCTGCCCG ACTGGGAAAC GCTGCCGTAC GACTCGTTCT CGCCGCACCA GGATCTCGTG TCCGAGCGGC TCGCTACCCT GCACGATCTC GGCGAAGGCC GTTGCGATAT CCTGCTGGTC CCGGCGACGA CCGCGCTCTA CCGGATGCCG CCCGCCTCGT TCATGGCCGC ATACACGTTT TCCTTCTCGC AGGGCGAGCG TCTCGACGAA GCGAAGCTGA AGGCACAGCT GACGCTCGCC GGCTATGAAC ACGTGAGCCA GGTCGTGCGG CCGGGCGAAT ACTGCGTACG CGGCTCGCTG ATCGACCTCT TTCCGATGGG CTCGCCGCTG CCGTACCGGA TCGACCTGTT TGACGATCAG GTGGACTCCA TCCGCGCGTT CGATCCCGAT TCGCAGCGCA GCCTGTATCC CGTGAAGGAC GTGCGCCTGT TGCCGGGCCG TGAGTTTCCG TTCGACGAAG CCGCGCGCAC CGCGTTTCGC AGCCGCTGGC GGGAGGTGTT CGAAGGCGAT CCGAGCCGCG CGTCGATCTA TAAGGACATA GGCAACGGCG TGCCGTCGGC GGGCATCGAA TACTATCTGC CCCTCTTCTT CGAAGAGACC GCGACGCTCT TTCACTATCT GCCCGAGGCT GCGCAACTGG TGTTCGTCGG CGATCTGGAC GCCGCCATCC GGCGCTTCAC GGCGGACACC AAACAACGCT ACGGCTTTCT GTCGCACGAC CGCGACCGGC CGATTCTCGA ACCGAAGCGC CTGTTCCTGT CGGACGACGA TTTCTACACG TTCGCCAAGC CGTTCGCGCG CCTGTCGCTG CCCGGCAACG CGGGCGGAGG CTGGGCCGTG CCGCTGCCCA ATCTCGCCAT CGACCGCCAC GCCGACGACC CCGTCTCCGC GTTGCGCGCG TGGCTCGACA CGACGCCGAA CCGCGTGCTG TTGGCGGCGG AATCGGCGGG CCGCCGGGAA ACGATCGCAC AATTGCTGGC CGACAACGAC CTGCACCCCG CGTCCGCCGA CGGCTACGAA GACTGGCTGA CGTCCGACGC GCGGTTCGCG CTCAGCGTCG CGCCGCTCTC AAACGGGTTT GCGATCCCCT CCGAAGGCGT CGCGTTCCTG ACGGAAACGG AACTGTACGG CCCGCTCGCG CGCAAGACGG GACGACGCCG CCAGGAACAG GCGAGCAACG TCGATTCGAT GGTGCGCGAT CTGTCGGAGC TGAAGGTCGG CGACCCCGTC GTGCATTCGC AGCACGGCAT CGGCCGCTAC ATGGGCCTCG TGACGATGGA CCTCGGTGAA GGCGAAACCG AGTTCCTGCA CCTCGAATAC CAGGGCGACA GCAAGCTCTA CGTGCCCGTG TCGCAGTTGC ACGTCATTTC GCGCTACAGC GGCGCCGATC CCGACAGTGC GCCGCTGCAC GCACTCGGCT CGGGACAGTG GGAAAAGGCG AAGCGCAAGG CTGCTCAGCA GATCCGCGAT ACGGCGGCCG AACTCCTGAA CCTGTACGCT CGCCGTGCCA TGCGCGAAGG CCATGCCTTC CCGCTTGATC CGCGCGACTA CGTGAAATTC GCGGAAAGTT TCGGCTTCGA GGAAACGCCT GACCAGGCGG CCGCGATCGC CGCCGTGATC GGCGACATGA CAAGCGGCAA GCCGATGGAT CGCCTCGTGT GCGGCGACGT CGGTTTCGGC AAGACGGAAG TCGCGTTGCG CGCGGCCTTC ATCGCGGTGA TGGGCGGCAA GCAGGTCGCG CTGCTCTCGC CCACCACGCT GCTCGCCGAA CAGCACACGC AGACCTTCAC CGACCGCTTC TCCGACTGGC CGGTGCGCAT CGCCGAATTG TCGCGCTTCA AGACGGGCAA GGAAGTCAGC GCGTCGATCC AGCAGATCAA CGAAGGCAGC GTCGATATCG TGATCGGCAC GCACAAGCTG CTCTCGTCGG ATGTGCAGTT CAAGCGGCTC GGGCTCGTGA TCATCGACGA GGAGCACCGT TTCGGCGTGC GCCAGAAGGA AGCGCTCAAA GCGCTGCGTG CCGAAGTCGA TGTGCTGACG CTCACCGCGA CGCCAATTCC GCGTACGCTC GGCATGGCGC TCGAAGGTCT GCGCGACTTC TCCGTGATCG CCACAGCGCC GCAAAAGCGC CTCGCGATCA AGACCTTCGT GCGGCGCGAG GAAGACGGCG TGATCCGCGA AGCCATGCTG CGCGAACTGA AGCGCGGCGG CCAGGTGTAC TTCCTGCACA ACGAGGTCGA AACCATCGAA AACCGCCGCC AGATGCTCGA AGCGCTCGTG CCCGAAGCGC GCATCGCGGT GGCGCACGGC CAGATGCACG AGCGCGAACT CGAACGCGTG ATGCGCGATT TCGTGGCGCA ACGCGCGAAC GTGCTGCTGT GTACCACGAT CATCGAAACG GGTATCGACG TGCCGAGCGC GAACACGATC CTGATTCATC GCGCCGACAA ATTCGGTCTT GCGCAACTTC ACCAGTTGCG CGGGCGTGTC GGGCGCTCGC ATCACCAGGC GTACTCGTAT CTGCTCGTGC ACGATCCGCA AGGTCTCACG AAGCAGGCGC AACGACGTCT CGAAGCGATC CAGCAGATGG AAGAGCTCGG TGCCGGCTTC TATCTGGCGA TGCACGACCT CGAAATCCGC GGCACGGGGG AAGTGCTCGG CGACAAACAG TCGGGCGAGA TTCACGAGAT CGGTTTCCAG CTCTATACCG ACATGCTGAA CGACGCGGTA AAGGCGCTGA AAAACGGCAA GGAGCCGGAC CTCACGGCGC CACTGGCGGC CACGACGGAG ATCAACCTGC ATACGCCCGC GATTCTTCCC GCCGACTATT GCGGCGACGT GCAGGAGCGT CTGTCGCTGT ACAAGCGTCT CGCGAACTGC GAGCACAACG ATTCGATCGA CGGCATTCAG GAAGAATTGA TCGACCGTTT CGGCAAGATG CCGCCGCAAG CGCATGCGCT CGTCGAAACA CACCGCTTGC GCCTGGCCGC CAAGCCGCTC GGCATTTCGA AGATCGACGC GGGCGAGGCT GTGATCGGCC TGCAGTTCAT CCCGAATCCG CCCATCGACG CGATGCGGAT CATCGAGATG GTTCAGAAGC ATAAGCACAT CAAGCTCGCG GGTCAGGACA AGCTGCGCAT CGAAACGCGC AGTCCCGATT TCACGGTGCG CGTCGCGACC GTGAAGGAGA CGCTGCGCGC GCTCGGCACA CCGTCCAGGG GCGCCGCGGA TCAGCGCGTG GCGTCGTCGC GCTAG
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Protein sequence | MPDIAASTQS ASSTPVALVK AGQRFVFDGT HGSSDALLIA RYHTAHKAQM PLLAVVCASA VDAQRLSQEL AFFAPDARIR LLPDWETLPY DSFSPHQDLV SERLATLHDL GEGRCDILLV PATTALYRMP PASFMAAYTF SFSQGERLDE AKLKAQLTLA GYEHVSQVVR PGEYCVRGSL IDLFPMGSPL PYRIDLFDDQ VDSIRAFDPD SQRSLYPVKD VRLLPGREFP FDEAARTAFR SRWREVFEGD PSRASIYKDI GNGVPSAGIE YYLPLFFEET ATLFHYLPEA AQLVFVGDLD AAIRRFTADT KQRYGFLSHD RDRPILEPKR LFLSDDDFYT FAKPFARLSL PGNAGGGWAV PLPNLAIDRH ADDPVSALRA WLDTTPNRVL LAAESAGRRE TIAQLLADND LHPASADGYE DWLTSDARFA LSVAPLSNGF AIPSEGVAFL TETELYGPLA RKTGRRRQEQ ASNVDSMVRD LSELKVGDPV VHSQHGIGRY MGLVTMDLGE GETEFLHLEY QGDSKLYVPV SQLHVISRYS GADPDSAPLH ALGSGQWEKA KRKAAQQIRD TAAELLNLYA RRAMREGHAF PLDPRDYVKF AESFGFEETP DQAAAIAAVI GDMTSGKPMD RLVCGDVGFG KTEVALRAAF IAVMGGKQVA LLSPTTLLAE QHTQTFTDRF SDWPVRIAEL SRFKTGKEVS ASIQQINEGS VDIVIGTHKL LSSDVQFKRL GLVIIDEEHR FGVRQKEALK ALRAEVDVLT LTATPIPRTL GMALEGLRDF SVIATAPQKR LAIKTFVRRE EDGVIREAML RELKRGGQVY FLHNEVETIE NRRQMLEALV PEARIAVAHG QMHERELERV MRDFVAQRAN VLLCTTIIET GIDVPSANTI LIHRADKFGL AQLHQLRGRV GRSHHQAYSY LLVHDPQGLT KQAQRRLEAI QQMEELGAGF YLAMHDLEIR GTGEVLGDKQ SGEIHEIGFQ LYTDMLNDAV KALKNGKEPD LTAPLAATTE INLHTPAILP ADYCGDVQER LSLYKRLANC EHNDSIDGIQ EELIDRFGKM PPQAHALVET HRLRLAAKPL GISKIDAGEA VIGLQFIPNP PIDAMRIIEM VQKHKHIKLA GQDKLRIETR SPDFTVRVAT VKETLRALGT PSRGAADQRV ASSR
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