Gene Bphy_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphy_0002 
Symbol 
ID6241508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phymatum STM815 
KingdomBacteria 
Replicon accessionNC_010622 
Strand
Start bp2175 
End bp3278 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content60% 
IMG OID642591765 
ProductDNA polymerase III subunit beta 
Protein accessionYP_001856245 
Protein GI186474775 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.201514 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00206466 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAACTGG TCAAGACCGA ACGCGATAAC CTCCTCAGGC CGCTGCAAAC CGTGAGCGGC 
ATTGTCGAAC GCCGTCATAC GTTGCCGATC CTCGCCAATT TGCTCATCAC CAAGAACGGC
CCGGACGTTT CGTTCCTGTC CACCGACCTC GAACTGCAGA TCACCACGCG TGCCGACTTC
GGTGTCGGCG GTGAATCGGT GGCCACCACG GTGGCGGCGC GCAAGCTGCT CGACATTCTG
CGCGCGATGC CCGACGGGCA GGTCACACTC ACCCTGAACG ACAAGCGTCT GACGGTTCAG
TCCGGCAAGA GCCGTTTCGC GCTGCAGACG CTGGCGGCCG ACGAGTTCCC GACCGTCGCT
CAAGCTAAAG ACTTCGGCGC GAACCTCGCG GTTCCCCAAA AAACGTTCCG CCAGTTGCTC
GGCATGGTTC ATTTCGCGAT GGCGCAGCAG GACATCCGTT ACTACCTGAA CGGCATGTTG
CTGGTGGTCG ATGGCGACCA GCTGATGGCC GTGGCAACGG ACGGTCACCG TCTCGCGTAT
TCGTCGATGA AGATCGAAGG CTCGTTTGCG CGCCAGGAAG TCATCATCCC GCGTAAGACG
ATTCTCGAAC TTCAACGTCT GCTCGAAGAT ATCGACGACG TGCTCAAGAT CGACATCGCG
CCGACGCAGG TGAAGTTCAC CTTCGGCGGC GTCGAACTGG TGTCGAAGCT GGTCGAAGGC
AAGTTCCCCG ACTTTCAGCG CGTGATCCCG AAGTCGCACA AAAACACGTT CGTGATCGGT
CGGGAAGAAC TGCAGCGCTC GCTGCAACGC GCGGCCATTC TGACGTCGGA CAAGTTCAAG
GGTGTGCGCT GCATCGTCGA GCCGGGCCAG CTGAAGATCA TGTCCACCAA CGCGGACCAG
GAAGAAGCGC AGGAAGAACT CGAAATCCCG TATCAGGGCG ACAGCATCGA CATCGGTTTC
AACGTCACGT ATCTGCTCGA CGTGCTCGCG AACCTGAAGG TCGACATGCT GGAAATCAGC
CTCGGCGACG CCAGTTCGAG CGCGCTGATC ACGATTCCCG AGAACGACGA GTTCAAATAC
GTGGTGATGC CGATGCGCAT CTGA
 
Protein sequence
MQLVKTERDN LLRPLQTVSG IVERRHTLPI LANLLITKNG PDVSFLSTDL ELQITTRADF 
GVGGESVATT VAARKLLDIL RAMPDGQVTL TLNDKRLTVQ SGKSRFALQT LAADEFPTVA
QAKDFGANLA VPQKTFRQLL GMVHFAMAQQ DIRYYLNGML LVVDGDQLMA VATDGHRLAY
SSMKIEGSFA RQEVIIPRKT ILELQRLLED IDDVLKIDIA PTQVKFTFGG VELVSKLVEG
KFPDFQRVIP KSHKNTFVIG REELQRSLQR AAILTSDKFK GVRCIVEPGQ LKIMSTNADQ
EEAQEELEIP YQGDSIDIGF NVTYLLDVLA NLKVDMLEIS LGDASSSALI TIPENDEFKY
VVMPMRI