Gene Bmur_1958 details

Gene Information

• Locus tag: Bmur_1958
• ID: 9142957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Brachyspira murdochii DSM 12563
• Kingdom: Bacteria
• Replicon accession: NC_014150
• Strand: +
• Start bp: 2228963
• End bp: 2232484
• Gene Length: 3522 bp
• Protein Length: 1173 aa
• Translation table: 11
• GC content: 35%
• Product: DNA-directed RNA polymerase, beta subunit
• Protein accession: YP_003634235
• Protein GI: 296126983

Plasmid Coverage information

• Num covering plasmid clones: 63
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAATA ATATTCAGAT AGATAATAAA GTATATCCAG AACGAGGGGT AGAGTTCGCA 
AAGAAATATA GGATAGAAAA TGGACGTGTA AACTTTTCGC GTTCCGCTTC CGTAATAGAA 
CCTCCTGATC TCCTCGCTAT ACAGAAAGAG TCATACGAGA GCTTCCTTCA AAAGGATGTA 
CCTGAAAATA AAAGAAAAAA TGAAGGATTG CAGGAAGTAT TGACTTCTAT ATTTCCTATA 
GTTGCTTCCA ATGAAAAAAT GCAAATAGAG TTTATATCTT ATTCTATAGG AGAGCCTAAA 
ATTACAGAAA AAGAAGCTAG AAGAAGAGAT AAAACTTACG CTTATCCTTT TAAAATAAAA 
GTTCAATTAA CTGTAAGAGA CCCAGAAAGA ATTATAGAAC AAGAAATTTT TGTAGGCGAT 
ATACCTGCTA TGACAGATAG AGGCACATTT ATAATTAATG GTGCTGAACG TGTTGTAGTT 
TCTCAAATTC ACAGATCTCC TGGTGTTGTT TTCAATAGAA GCGACAGAGA TGCTATGTTT 
GTAGCTAAGA TCATTCCAGA CAGAGGTACT TGGCTTGAAT TTGAGCTTGA TACCAAAAAA 
GACATTATGT ATGTTAGAAT AGACAGAAAG AAAAAACTTC CTGTTACAGT ATTTTTAAGA 
GCTATTGGTA TCACAACTAA TGAAGAAATT TTGAAATTAT TTTATGAAGT AGATAATATA 
TCATTAGAAA AACTTTCAGA TGAAGATGCT AAAGAAGCTT TAATAGGCAG AAGATCTTAT 
TCTACAGTAT TTGATACAGA AAACCCTGAT GAAATTATAT TGAATCCAGG CGAACTTATC 
AACCCTAACT TGGCTGAAAG ACTTTTAATG AGTGGTATTA AAGAAATATC CGTATTAAAT 
ATGGAAGCAA TAAAAGACAA TGTTACCATA ATTAATACTT TAGATAAAGA TACAACAAAA 
AACCAAGAGG AAGCATGCAC TAAAATTTAT AATGTTATAA GACCGGGAGA ACCTGCTTTA 
ATAGAAAACG TTGTAAGAAC TTGTAATGAC TTGGTATTTG ACCCTAAATT GTATGCTTTG 
GGTGATGTAG GACGTTATAA AATAAACAAA AGATTAAACT TCCCTGAAAG CGAACAGGAT 
AAAGTTTTAA GACATAAAGA TATAATAGAG ACTATTCGTT TTTTAATAAA AGTATTTATT 
AATGAAGAAC AGTTAGATGA TATAGATCAC TTAGGAAACA GACGTGTAAG AAGTGTAGGA 
GAATTGCTTG CTATACAAAT AAAAGCTGGA TTTACTAGAA TGGAGCGTAT AGCCAAAGAA 
AGAATGCAAA TGCAGGATAT GGAAGCAGTA ACTCCTCAGT CTCTTGTAAG TATTAAACTT 
ATACAGGCTG TAATAAAAGA GTTTTATGGT ACAAGCCAAT TATCTCAGTT CATGGATCAG 
AACAATCCAT TATCAGAGAT TACACATAAA AGAAGATTAA ACGCTTTAGG TCCGGGCGGT 
CTTACTAGAG ACAGAGCAGG TTTTGAAGTA AGAGACGTAC ACCATACTCA CTATGGTAAA 
ATATGTCCTA TTGAAACTCC TGAAGGACCA AATATCGGAC TTATAGTTTC ACTTGCTACT 
TACGCTAAAA TTAATAAACA TGGATTCTTA GAAACTCCAT ATAGAAAAGT TATAGACGGA 
AAAGTAACAG ATGAAATAGA ATACTTAACA GCACATGATG AAGAGAGATA TCATATTGCT 
GATGCTAATG CTCCTTTAAA CGAAGACGGA ACATTTAAAG AAAATCTTAT ATCAACAAGA 
TATAGAAGTG AATTTCCATA TTCTTCACCA GATCAGGTTC AGTATATGGA CGTTTCACCT 
CAGCAGATAG TTTCTCTTTC AAGTTCATTA ATACCGTTCT TGGAGCATGA CGATGCTAAC 
AGAGCTTTAA TGGGTTCAAA CATGCAGCGT CAAAGTGTTC CTTTGCTTTA TCCTGAAGCT 
CCTATAGTGG GAACAGGTGT AGAGGCAAAA ATTTGTCAGC CTGGTACTGG AATAGCAGTA 
CATGCAAAAA GAGCTGGAAA AGTTATAAAA GTTGTACATG ATGAAATTAT AATTAAACCT 
ACAAAACAAA ACAGCGATGA TGATTTTGAT GTTTATGAAT TAGTAAAATA TCAAAGAACT 
AACCAAGATA CTAATTATCA TCAAAGACCT GTAGTAAATG TGGGCGATGT AGTTAAGGCT 
GGAGGACTTC TAGCTGACGG ACCTGCAACT GACCATGGTG AGTTAGCACT TGGAAGAAAT 
GTCTTAGCTG CTTTCATGAT CTTTGAAGGA TACAACTTTG AGGACGCTAT ACTTCTAAGC 
AGAAGATTAG TTCAGGAAGA TGTATTTACT TCCATTCACA TAGAAGAGTT TTCTGTAGAA 
GCTCGTGAAA CAAAATTAGA TAAAGAAAAT ATAACTAGAG ATATACCTAA TGTATCAGAT 
TCGGCTTTCA AAAACCTAGA TGAGAGAGGA ATTGTAAGAA TAGGTGCCAA AGTAAAAGCA 
GGCGATATAT TAGTAGGTAA AGTAACTCCA AAAGGTGAAA CTGAAATAAC TCCGGAATAC 
AGACTTCTTC ACTCAATATT CGGTGAAAAG GCAAGAGATG TAAAAGATAC TTCTTTAAGA 
GTGCCTCATG GTAAAGAGGG TACTGTTATA GATGTAAGAG TGTACAGCAG AGAAAACGGA 
GATGAATTAA AGCCGGGTGT AGAAGAAGTA GTAAAAGTAT TCTTAGCTAA AAAACGTATA 
ATACAGGAAG GCGATAAAAT GGCAGGCCGT CACGGTAACA AAGGGGTTGT TGCTAGAATT 
ATGCCTATAG AGGATATGCC TTTCTTAGAA GACGGTACTC CAGTAGATAT ATGTCTTAAC 
CCATTAGGTG TACCTTCACG TATGAATATA GGTCAGGTAA TTGAGATGTT ACTTGGTTGG 
TCTGGTCATA AAATGGGACT TAAATATGCT TGTCCAGTAT TTGAAGGACC AAAAGAAGAG 
GCTTTGAGAG AGGCATTTGT TACAAGCGGT ATGAATCCTA ATGGAAAGGT TAGACTTTAT 
GATGGAAGAA CAGGAGAGCC TTTCAAAAAT GAAGTAGCTG TTGGATACAT GTATATGCTT 
AAACTTAATC ACTTGGTTGA AGATAAAGTA CATGCTAGAA GTACAGGTCC TTACTCACTC 
GTTACTCAGC AGCCTTTGGG AGGTAAATCT CAGTTTGGAG GTCAGCGTTT AGGAGAGATG 
GAAGTTTGGG CATTAGAGGC TTATGGAGCT GCAAATATGC TTCAGGAGTT CTTAACTGTT 
AAATCAGATG ATATGACAGG ACGTGCTAGA ATATATGAAT CTATTGTTAA AGGTGATGTT 
ATATCTTCTC CGGGTATACC AGAAAGCTTT AACGTATTAG TTCAGGAACT TAGAGGTTTG 
GGTCTTAATA TTACTATTCA TGATGAAGAG GGCAATCAGC TTCCTTCTAC TGAAAAAGAA 
CTTAGACAAA AAACTAAAAA GAAAACACAG ATTTTTAAAT AA 

 

Protein sequence

MANNIQIDNK VYPERGVEFA KKYRIENGRV NFSRSASVIE PPDLLAIQKE SYESFLQKDV 
PENKRKNEGL QEVLTSIFPI VASNEKMQIE FISYSIGEPK ITEKEARRRD KTYAYPFKIK 
VQLTVRDPER IIEQEIFVGD IPAMTDRGTF IINGAERVVV SQIHRSPGVV FNRSDRDAMF 
VAKIIPDRGT WLEFELDTKK DIMYVRIDRK KKLPVTVFLR AIGITTNEEI LKLFYEVDNI 
SLEKLSDEDA KEALIGRRSY STVFDTENPD EIILNPGELI NPNLAERLLM SGIKEISVLN 
MEAIKDNVTI INTLDKDTTK NQEEACTKIY NVIRPGEPAL IENVVRTCND LVFDPKLYAL 
GDVGRYKINK RLNFPESEQD KVLRHKDIIE TIRFLIKVFI NEEQLDDIDH LGNRRVRSVG 
ELLAIQIKAG FTRMERIAKE RMQMQDMEAV TPQSLVSIKL IQAVIKEFYG TSQLSQFMDQ 
NNPLSEITHK RRLNALGPGG LTRDRAGFEV RDVHHTHYGK ICPIETPEGP NIGLIVSLAT 
YAKINKHGFL ETPYRKVIDG KVTDEIEYLT AHDEERYHIA DANAPLNEDG TFKENLISTR 
YRSEFPYSSP DQVQYMDVSP QQIVSLSSSL IPFLEHDDAN RALMGSNMQR QSVPLLYPEA 
PIVGTGVEAK ICQPGTGIAV HAKRAGKVIK VVHDEIIIKP TKQNSDDDFD VYELVKYQRT 
NQDTNYHQRP VVNVGDVVKA GGLLADGPAT DHGELALGRN VLAAFMIFEG YNFEDAILLS 
RRLVQEDVFT SIHIEEFSVE ARETKLDKEN ITRDIPNVSD SAFKNLDERG IVRIGAKVKA 
GDILVGKVTP KGETEITPEY RLLHSIFGEK ARDVKDTSLR VPHGKEGTVI DVRVYSRENG 
DELKPGVEEV VKVFLAKKRI IQEGDKMAGR HGNKGVVARI MPIEDMPFLE DGTPVDICLN 
PLGVPSRMNI GQVIEMLLGW SGHKMGLKYA CPVFEGPKEE ALREAFVTSG MNPNGKVRLY 
DGRTGEPFKN EVAVGYMYML KLNHLVEDKV HARSTGPYSL VTQQPLGGKS QFGGQRLGEM 
EVWALEAYGA ANMLQEFLTV KSDDMTGRAR IYESIVKGDV ISSPGIPESF NVLVQELRGL 
GLNITIHDEE GNQLPSTEKE LRQKTKKKTQ IFK