| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_2916 |
|---|
| Symbol | |
|---|
| ID | 6198311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 3320556 |
|---|
| End bp | 3322172 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641706863 |
|---|
| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit |
|---|
| Protein accession | YP_001833973 |
|---|
| Protein GI | 182679827 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.36455 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGC ATTACAAACC GCTTTTCACT CTCGCCAAGG ATACGACGCC CTATCGCAAG
CTGACACAGA ATGGTGTCCG CCTCGAAAAA CTGGGCAATC ACGAAATTCT TATGGTCGAT
CGTGAGGCGC TCCGCACCCT GGCCGATCAG GCAATGGCCG ATATCAACCA TCTGCTCCGG
CCTGCCCATC TCGCCCAACT GACCAAAATC CTCGACGATC CCGAGGCGAC GTCCAACGAT
AAATTCGTCG CCTATGATCT TTTGAAAAAC GCCAATATCG CCGCGGGCGG CATATTGCCC
ATGTGCCAGG ATACGGGCAC CGCGATCGTC ATGGGCAAGA AAGGCCGTCT CGTCTTTACC
GATGGCGAGG ACGAAAGCGC GCTGGCCGAG GGGATCAAGG ACGCCTATGA GCGCAAGAAC
CTGCGTTATT CGCAGCTCGC GCCGATCTCC ATGTTCGAGG AAAAGAACAC CAAGAACAAT
CTCCCGGCGC AGATCGAAAT CTATGCCGAG GGTGAGGACG CCTACAAATT CCTGTTCGTC
GCCAAAGGCG GCGGTTCAGC CAATAAAACC TTCCTGTTCC AGGCGACCCC CTCTCTTCTC
ACGCATGATC GGCTTATCGC CTTCCTGCAC GAAAAGATCC TGACACTCGG CACGGCCGCC
TGCCCTCCCT ATCATCTCGC CATCGTCATC GGCGGGACAT CGGCGGAATA TAATCTGAAG
ACCGTCAAAC TCGCTTCGAC CCATTATCTC GACGGCCTGC CCATCGAGGG CGGCGAAGAT
GGCCACGCCT TCCGCGATCT CGCCATGGAA GCGGAAATCT TCAAACTGAC ACAGCAACTC
GGCGTCGGCG CGCAATTCGG CGGCAAATAT TTCTGCCATG ACGTGCGCGT CATCCGTCTG
CCGCGCCATG GCGCCTCGCT GCCGATCGGT ATTGGTGTCT CCTGCTCGGC CGATCGCCAG
GCGCTCGGCA AGATCACCCG CGAGGGCGTG TTCCTGGAAG AACTGGAACA TGATCCGGCG
AAATATCTGC CGCATGTCGA TGAAGCCAAG CTCGGCGGCG AGGTCGTCAA TATCGACCTG
ACCAAGCCGA TGAGCGAGAT TCTCGCGACT TTGTCAAAAT ATCCGATCAA GACGCGGCTA
TCTCTCACCG GCCCGATGAT CGTCGCGCGC GATCTCGCCC ATGCGAAGAT CCGCGAAAGG
CTGGAGCGCG GCGAGCCCAT GCCGGATTAT TTCAAGAACC ATCCGGTCTA TTACGCGGGT
CCCGCCAAGA CACCGGAAGG CTATGCCTCG GGCTCGTTTG GGCCGACCAC GGCCGGTCGC
ATGGATTCCT ATGTCGATCA ATTCCAGGCG GCGGGCGGCT CCATGGTCAT GCTCGCCAAG
GGCAATCGCT CAGCCCAGGT GCGCGAGGCC TGCGCCAAGC ATCACGGCTT CTATCTCGGC
TCGATCGGCG GCCCAGCGGC AAGGCTCGCC AAGGATTGCA TCAAAAAGGT CGAGGTCCTC
GAATATCCGG AGCTCGGCAT GGAAGCGATC TGGAAGATCG AGGTCGAGAA TTTCCCCGCT
TTCATTGTCA TCGATGACAA GGGCAATGAT TTCTTCAAGG AATTGCATCT GGGATAA
|
|---|
| Protein sequence | MTLHYKPLFT LAKDTTPYRK LTQNGVRLEK LGNHEILMVD REALRTLADQ AMADINHLLR
PAHLAQLTKI LDDPEATSND KFVAYDLLKN ANIAAGGILP MCQDTGTAIV MGKKGRLVFT
DGEDESALAE GIKDAYERKN LRYSQLAPIS MFEEKNTKNN LPAQIEIYAE GEDAYKFLFV
AKGGGSANKT FLFQATPSLL THDRLIAFLH EKILTLGTAA CPPYHLAIVI GGTSAEYNLK
TVKLASTHYL DGLPIEGGED GHAFRDLAME AEIFKLTQQL GVGAQFGGKY FCHDVRVIRL
PRHGASLPIG IGVSCSADRQ ALGKITREGV FLEELEHDPA KYLPHVDEAK LGGEVVNIDL
TKPMSEILAT LSKYPIKTRL SLTGPMIVAR DLAHAKIRER LERGEPMPDY FKNHPVYYAG
PAKTPEGYAS GSFGPTTAGR MDSYVDQFQA AGGSMVMLAK GNRSAQVREA CAKHHGFYLG
SIGGPAARLA KDCIKKVEVL EYPELGMEAI WKIEVENFPA FIVIDDKGND FFKELHLG
|
|---|
| |