| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_2376 |
|---|
| Symbol | |
|---|
| ID | 6199487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 2714654 |
|---|
| End bp | 2716240 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641706359 |
|---|
| Product | RNA-binding S4 domain-containing protein |
|---|
| Protein accession | YP_001833476 |
|---|
| Protein GI | 182679330 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000179936 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAGA CGTCAGACGG CCGTCCTCCC CGCGCATCGG TGGGCGCGGC CCCGAGAAAG
GCTGGAACCA AGCCTGGCTT TTCAAAGCCT GGTTTTTCAA AGCCTAGTCC TTCAAGGCCT
GGCCCTTCAA AGCCCAGTTC CAAGCCCGGC CCTTCCGCGC CTCCGCGTCC TTCCAAGACG
CAAGGGTCCA AAGTCTCTTC GTTTAAAGGT CAGAAACCGC GTTTCGCGAA GCCCGTCCTC
GCGGAACAAA AGGACGCGCA AGAGCCACAA CGCATTGCCA AGGTCATGGC CCGTGCCGGG
CTCTGCTCGC GCCGTGACGC GGAAGCCTGG ATCGCGGAGG GTCGCGTCAG TGTCAACGGC
ACCGTCCTGA CACAACCGGG CGTGAGCGTC AGCGACGAGG ATGTGATTCT GGTCGATGGC
GAAAAACTCG CTGCGCGCGG TCACACGCGG CTGTTTCTCT TCCACAAGCC GCGCGGACTG
GTGACGACCA ATCATGATCC TGAAGGCCGG CCCACCGTCT TCGATTATCT GCATGAGCGC
CACCCAGACA TGCCGCGCGT CCTCAGCATC GGCAGGCTCG ACATCAATAC CGAAGGGCTG
TTGCTGTTGA CCAATGACGG CGGGCTTTCG CGCCTGCTCG AATTACCGAC GACCGGCTGG
GTGCGCCGTT ATCGCGTGCG CGCCAAGGGC ACGACTGATC AGGCCGTGCT CGATCAATTG
CGCCAGGGCA TCACCATAGA CGGCATTCAT TATGCCGGCA TGGAAGTCAC GTTCGACCGC
GAGCAAGGCG CCAATAGCTG GCTCACGCTG AGCCTGCGCG AGGGCAAGAA CCGCGAGGTC
AAGCGTGTGC TGGAACAGAT CGGGCTGGAG GTCAATCGCC TGATCCGCCT CTCCTTTGGA
CCTTTCCAGC TTGGCGATCT GCCCGAGGGA GACGTCACAG AAGTGCGCAC CCGCGTTCTG
CGCGATCAAT TAGGGCCGAG CCTCGCGGCG GCGGCGGGCG TCGATTGGAC ACGCCATGAC
GAGGATGCTG CCGAACCAGC AGCCCCCGAG CGCGCGAGAA AAACACCGTC AAAGACCAGA
ACAGAGGGCA AGTCCGTTAC AAAATCCCAC GGGGCAGCGC CTCGCCCTTC GTCCAGGACA
TTCACGAAAG ACAAGCCGAG AGAAGACGAA CATCCAGCGC GGACGGCCAA ACCGGCACCA
CGCTCACGCA AACATATTTC GCTTCTGCGT GCTGAAGACG AAAACCGCAA GGGTGCGCCC
CGCAAGCGCG TCGAAGCCCA AGAAATCGCC GACCGCCATG GTCGCGTGGT CACGGTCGAA
CATCGTGTGA CAGCTGGACC CACGTCAAAG AGGGCCGAAC CCGCAACGCG CAACGCAAAG
CGTTTCGCTG CCGCCCATGC CGCCGCTGAG AAAGCCGAAC GCTACGCCAA ATTCGAGGCG
AAAAAGGCGA AGGGTTTAGG CGGTGAAGCC CATGCATCTC GCGGCAAAGA AGGCAAGCCG
AAAGGCGCTG TCCGCGGGAA ACAGGATACG CGGCCCCAGA GCCGAAAGAG CCCTGTCGGC
GGCGGCAAAA GTTTCAAGAA GAATTGA
|
|---|
| Protein sequence | MRKTSDGRPP RASVGAAPRK AGTKPGFSKP GFSKPSPSRP GPSKPSSKPG PSAPPRPSKT
QGSKVSSFKG QKPRFAKPVL AEQKDAQEPQ RIAKVMARAG LCSRRDAEAW IAEGRVSVNG
TVLTQPGVSV SDEDVILVDG EKLAARGHTR LFLFHKPRGL VTTNHDPEGR PTVFDYLHER
HPDMPRVLSI GRLDINTEGL LLLTNDGGLS RLLELPTTGW VRRYRVRAKG TTDQAVLDQL
RQGITIDGIH YAGMEVTFDR EQGANSWLTL SLREGKNREV KRVLEQIGLE VNRLIRLSFG
PFQLGDLPEG DVTEVRTRVL RDQLGPSLAA AAGVDWTRHD EDAAEPAAPE RARKTPSKTR
TEGKSVTKSH GAAPRPSSRT FTKDKPREDE HPARTAKPAP RSRKHISLLR AEDENRKGAP
RKRVEAQEIA DRHGRVVTVE HRVTAGPTSK RAEPATRNAK RFAAAHAAAE KAERYAKFEA
KKAKGLGGEA HASRGKEGKP KGAVRGKQDT RPQSRKSPVG GGKSFKKN
|
|---|
| |