| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1899 |
|---|
| Symbol | |
|---|
| ID | 6200732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 2166075 |
|---|
| End bp | 2167565 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641705888 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_001833012 |
|---|
| Protein GI | 182678866 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGC AAATGCCACA TCCCGAGGCG GCCATCCTGA CACATCGCGG GGAAATCGTC
GCGCGGCTTG AACAGATTGT TCCAGGCGGT GTCATTCATA CCGAACGGGA AATGCGCGTC
TATGAATGCG ACGCCCTGAC CCTCTACAGG CAATTGCCGC TCGTCGTCGT CTTGCCCGAG
ACGGTGGAAC AGGTGTCGCA GATTCTGCGG CTGGCGCAGG ACATGAACAT CAAGGTCGTG
CCGCGCGGCA GCGGGACATC CCTTTCCGGC GGCTCGCTAC CGCTCGCCGA TGCGATCCTG
CTCGGCATGA GCAAGTTCAA TCGCATTCTC GAAACCGATT TCGAAAATCG CTGCGCTCGT
GTGCAACCCG GCGTGACCAA TAGCGCGATC AGCCGGGCCG TCGAGGACCA TGGCTTCTAT
TATGCGCCGG ACCCGTCCTC ACAGATCGCC TGTTCGATCG GCGGTAATGT CGCTGAAAAC
TCCGGCGGCG TGCATTGCCT GAAATATGGC TTGACCACCA ATAATATTCT CGGCCTCGAA
GTCGTGCTGA TGGGCGGCGA GGTGTTGCGG CTCGGCGGCA AGCATCTCGA TTCCGATCTC
TATGATCTCA TCGGCGTGCT GACCGGTTCG GAAGGTTTGC TCGGCGTCAT CACCGAGGTC
ACCGTGCGCA TCCTGCAAAA GCCGGAGACG GCGCGCGGCG TTCTGCTCGG CTTTCCGACG
GTCCAGGCGG GCGGAGATTG CGTCGCCGAA ATCATCGCCC GCGGCATCAT CCCGGGTGGC
CTCGAAATGA TGGACAAAGC CTCGATCGAC GCGGCCGAGG CCTTTCAGCC CTGCGGCTAT
CCCCGCGATG CCGGCAGCCT CGTGATCGTC GAACTCGACG GGACGCAGGC CGAGGTCGAT
GTGCTGATTG AAAGGGTCGC GGCCATTGCC CTGGAACAGG GGGCGACCTC GATCAAGGTC
TCTCAAAATG AGGCGGAGCG GCTGCGTTTC TGGTCAGGCC GGAAAAATGC GTTTCCGGCG
GTCGGCGCCA TCGGCCCCGA TTATCTGTGC ATGGATGGCA CGATCCCACG CTTTCAGCTC
TCGAATGTTT TGGCGCGGAT GGATCAACTC GCCGCCCAAT ATGGATTGCG CGTCGCCAAT
GTTTTTCATG CTGGCGATGG CAATCTGCAT CCCTTGATCC TCTATGATTC ATCAAAGCCC
GGCGACAGCG AAAAGGCCGA GGCTTTCGGC GCCGATATTC TTTGCCTTTG CGTCGAGGTC
GGCGGTGTGT TGACCGGCGA ACACGGGGTC GGCGTCGAAA AACGCGATTT AATGGATCGC
ATGTTCAATG AGATCGACCT GCAGCAGCAG GAGCGTTTGA AATGCGCTTT CGATCCGGCC
CACCGGCTCA ATCCGGGTAA AGTCTTTCCC ACTCTGCACC GCTGCGCGGA ACTCAGCCGC
ATGCATGTGC ACAATGGTCA ATTGCCCTTC CCCGATCTGC CACGGTTTTG A
|
|---|
| Protein sequence | MTLQMPHPEA AILTHRGEIV ARLEQIVPGG VIHTEREMRV YECDALTLYR QLPLVVVLPE
TVEQVSQILR LAQDMNIKVV PRGSGTSLSG GSLPLADAIL LGMSKFNRIL ETDFENRCAR
VQPGVTNSAI SRAVEDHGFY YAPDPSSQIA CSIGGNVAEN SGGVHCLKYG LTTNNILGLE
VVLMGGEVLR LGGKHLDSDL YDLIGVLTGS EGLLGVITEV TVRILQKPET ARGVLLGFPT
VQAGGDCVAE IIARGIIPGG LEMMDKASID AAEAFQPCGY PRDAGSLVIV ELDGTQAEVD
VLIERVAAIA LEQGATSIKV SQNEAERLRF WSGRKNAFPA VGAIGPDYLC MDGTIPRFQL
SNVLARMDQL AAQYGLRVAN VFHAGDGNLH PLILYDSSKP GDSEKAEAFG ADILCLCVEV
GGVLTGEHGV GVEKRDLMDR MFNEIDLQQQ ERLKCAFDPA HRLNPGKVFP TLHRCAELSR
MHVHNGQLPF PDLPRF
|
|---|
| |