| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_1389 |
|---|
| Symbol | |
|---|
| ID | 6198598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | - |
|---|
| Start bp | 1593837 |
|---|
| End bp | 1595003 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641705385 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | YP_001832518 |
|---|
| Protein GI | 182678372 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.465016 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTGA TTGCCTCGAC CCAGGAACTT AGGGATGTTT GTCAAAGGCT CGCACGCCAA
CCGTTCGTAA CCGTCGACAC CGAATTCCTG CGCGAAACCA CTTTCTGGCC GAAACTCTGT
GTGGTGCAAC TCGCGTCCAC AGAGGAAGCT GTTGCCGTTG ACGCCTTGGC TGAAGGCCTC
GACCTTTCGC CGCTCTTTGA GTTGATGGCC AATGAAGCCA CGGTAAAGGT CTTTCACGCG
GCCCGGCAGG ACCTCGAGAT CATCTGGAAC CTCGCCAAGC TCATTCCCAC ACCCTTGTTC
GATACGCAGG TCGCCGCCAT GGTCTGCGGT TTCGGCGATC AAATCTCCTA TGGCGATCTC
GTGCAGACCG TGACCAGGGT CAGCCTTGAT AAATCCTCGC GCTTCACGGA TTGGTCGCGA
CGCCCGCTGT CACCGGCGCA AGTGGATTAT GCCATCGCCG ATGTGACCTA TCTGCGCGAT
ATTTATCTTT ATCTGCGCCG CAAGCTGGAA ACCAGCAGCC GCCTCGCCTG GCTCAGCGAT
GAAATGGCGC TCCTCTCGTC TCCATCGACC TATGAACAGG CACCGGAGAC GGCCTGGGAA
CGGCTCCGCA ATCGCGTTCG CAAACCGCGC GATCTCGCCA TTTTGATGGA AATCGCGGCT
TGGCGCGAGG CTGAGGCCCA GGGCCGCGAC ATCCCACGCT CCCGCGTTCT CAAGGATGAT
ATTCTCATCG AGCTGTCGCT GGCCGCGCCA CGCTCAGCCG ATCATCTCGC CAATCTCAGA
GCCTTTCCCC GCGGCATGGA ACGCACCAAG GCCGGGATAG AGATTCTCGC GGCCATCGAA
CGCGGTCTTG CCCGCGATCC TAAATCCTTG CCAAAGATCG AGCGTGAAAG ACGGACCGGC
GGCAACGGTG CCACAGTGGA GCTTCTCAAG GTTCTCTTGC GCCAGGTCAG CGAAAGCCAT
GGCGTCGCCA GCAAGTTGAT CGCAACCGTC GATGATCTGG AAGCCATTGC CGCCGATGAT
GAAGCCGATG TGCCGGCACT GTCCGGCTGG CGGCGTGAAC TGTTCGGCGC GAGAGCGCTG
GAGCTCAAAA GCGGGAGACT GGCGCTCACC GTCGAGAAAG GCAAGGTCGT CCTCCTGGAA
TGGCAGGACG GCGACCCCAC ACCTTAG
|
|---|
| Protein sequence | MTLIASTQEL RDVCQRLARQ PFVTVDTEFL RETTFWPKLC VVQLASTEEA VAVDALAEGL
DLSPLFELMA NEATVKVFHA ARQDLEIIWN LAKLIPTPLF DTQVAAMVCG FGDQISYGDL
VQTVTRVSLD KSSRFTDWSR RPLSPAQVDY AIADVTYLRD IYLYLRRKLE TSSRLAWLSD
EMALLSSPST YEQAPETAWE RLRNRVRKPR DLAILMEIAA WREAEAQGRD IPRSRVLKDD
ILIELSLAAP RSADHLANLR AFPRGMERTK AGIEILAAIE RGLARDPKSL PKIERERRTG
GNGATVELLK VLLRQVSESH GVASKLIATV DDLEAIAADD EADVPALSGW RRELFGARAL
ELKSGRLALT VEKGKVVLLE WQDGDPTP
|
|---|
| |