Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bind_1001 |
Symbol | |
ID | 6200001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
Kingdom | Bacteria |
Replicon accession | NC_010581 |
Strand | + |
Start bp | 1146947 |
End bp | 1148542 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641704992 |
Product | protein-export membrane protein SecD |
Protein accession | YP_001832133 |
Protein GI | 182677987 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.541747 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCGTT TCGCGACCTG GAAAATCGCC TCGATCATCG GCATGACGTT GTTCGCTTTT CTCGTCATCC TGCCGAGCCT CTTCTCTCCA GAGCAACGCG AGGCCGTGAG CGCGCATCTG CCGCATTGGC TGCCCTTGCG CGCTATTGTT CTGGGTCTCG ATCTGCAAGG CGGCTCGCAT GTCCTGCTCG AGGTCGATGC GCCCTCCGTG CTGAAAACCC AGGTCGATAG CCTGCGCGAT GATTTGCGGC GGATCTTGCG CGAGGAGAAG ATCGGCATTT CGGGTGGTAT CGGCCTCTTG CCGCGTGGCG TCCAATTCCG CCTCGCTGAT CCAGCCGAAC GCGCCAAGCT TATGCCGAAG CTCCAGCAAT TGGCGGGTTC CAGCGGCGTG AACCTGCTGG GTGGCAATCG CGCGGCCTCT TTCGACATTG TCGAAAAGGA CGATGGCCTG ATCCAGGTTG TTGTGACCGA TGCCGCCATC AACGACCGCG TGCGGCGCGC GGTTGATCAA TCAATCGAAG TTTTACGGCG CCGCGTCGAT GCGCTCGGAA CGACAGAGCC GAACATTCAG CGCCAGGGCA ATGACCGCAT CCTTGTCGAA GTGCCGGGTC TGCAGGATAC ATCGAAGCTC AAGGAAATTC TCGGCACGAC AGCGAAGCTC GAATTCCGCC TTGTCGCGGA ACCTGGCACC GATCCGAACG AGATCGAGCA ACTCGACCAG GTCGAGAGCA ACGGCAAGCT GCCGATCGAG AAACGGGTGA TGGTGCAGGG CGAGGACTTG ACCGATGCCC AGCCGGGGTT CGACAGCCGC ACGCAGGAGC CGGTGGTCAA TTTCCGCTTT AATATTCGCG GTGGTCAGAA ATTTGGTGAA GTGACCGCCG CTAATGTCGG GCGTCCTTTC GCGATTGTGC TCGATGGCAA AGTGATTTCC GCGCCGCGTA TCAAGGGCCC GATCACCGGC GGCCAGGGCG AGATTTCCGG CAGTTTCACA GTTGAGCAGG CGAATAATCT CGCCATTCTC CTGCGCGCCG GTGCGTTGCC CGCCAAATTG AGCATTGTGG AGGAGCGCAC GGTCGGGCCG GGCCTGGGGC AGGATTCGAT CAATGCCGGT AAACGGGCGG CCTATGTCGG TGCCGCGCTC GTCGCACTTT ATATGCTCGT GACCTACGGC ATTTTCGGCG TCTTCGCCAA TCTCGCCCTT CTGGTCCATA TCGCCTTCAT TTTTGCGGGC CTGGTACTCC TCGGCGCCAC CCTGACCCTG CCGGGCATTG CCGGCATCGT TCTTACCATC GGCATGGCGG TCGATTCCAA CGTCTTGATC TATGAACGCA TCCGTGAGGA AGCACATGCA GGGCGTTCGA TCGTCTCGGC GCTCGATGCC GGCTTCAACC GCGCCTTCGC GACGATTGTC GATTCCAATG TCACGATGTT TGTCGCCGCG GCCATTCTCT ATTTCCTCGG CTCCGGGCCG GTACGCGGTT TCGCCGTTTC GCTGGCGCTC GGCATTTTGA CGACCATCGT CACCGCCGTG ACCATGACCC GCATGATGAT TACTCTCTGG TATCGCTCCA AGCGCCCGAC CCAATTGCCG ATCTAA
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Protein sequence | MLRFATWKIA SIIGMTLFAF LVILPSLFSP EQREAVSAHL PHWLPLRAIV LGLDLQGGSH VLLEVDAPSV LKTQVDSLRD DLRRILREEK IGISGGIGLL PRGVQFRLAD PAERAKLMPK LQQLAGSSGV NLLGGNRAAS FDIVEKDDGL IQVVVTDAAI NDRVRRAVDQ SIEVLRRRVD ALGTTEPNIQ RQGNDRILVE VPGLQDTSKL KEILGTTAKL EFRLVAEPGT DPNEIEQLDQ VESNGKLPIE KRVMVQGEDL TDAQPGFDSR TQEPVVNFRF NIRGGQKFGE VTAANVGRPF AIVLDGKVIS APRIKGPITG GQGEISGSFT VEQANNLAIL LRAGALPAKL SIVEERTVGP GLGQDSINAG KRAAYVGAAL VALYMLVTYG IFGVFANLAL LVHIAFIFAG LVLLGATLTL PGIAGIVLTI GMAVDSNVLI YERIREEAHA GRSIVSALDA GFNRAFATIV DSNVTMFVAA AILYFLGSGP VRGFAVSLAL GILTTIVTAV TMTRMMITLW YRSKRPTQLP I
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