| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_0688 |
|---|
| Symbol | |
|---|
| ID | 6201752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010581 |
|---|
| Strand | + |
|---|
| Start bp | 769091 |
|---|
| End bp | 770551 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641704685 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_001831827 |
|---|
| Protein GI | 182677681 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.121563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.318581 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAGA TTTTGATGCC CGAAAGCGTC GATAAGGAGA TTTTGTGGAC GCCGCTCGGT
CTCGTCACGC CTTTGCAGGC CCGTGTCAGT GGTCATGTTC CGTTGCGCCC GGCGCGCGGG
ATTTCCATCG ATACGCGGAC ATTGCGCGAG GATGATCTCT TCTTCGCCAT CAAGGGTGAT
AACAGCGATG GCCACGATTA CGTCCCCGCG GCCTTCGCCA AGGGCGCCAT GGCGGCGGTC
GTCGATGAAG CTCATGCCGA CCGTCTAGCA GCGCATGGCC CTCTCTATGT CGTGCATGAG
GTTCTGCCGG CGCTCGAACG CCTTGGCCAG GCGGCGCGCC GGCGCGTCGA GGCTCGCGTC
GTCGCGGTGA CGGGATCGGT CGGCAAAACC TCGACCAAAG AGGCTCTGCG GCTGGTCTTG
ACCCAGGGCG GCTCTGTCCA TGCCTCGGTC GCGTCTTATA ATAATCATTG GGGCGTGCCG
TTGACCCTCG CGCGCATGCC GCGCGACGCG CGTTTCGGGA TTTTCGAGAT CGGCATGAAT
CATCCGGGCG AAATCACTCC GCTCGTTGGC ATGGTGCGAC CGCATGTTGC GATCATCACC
ACGGTGGCTC CGGTCCATCT CGAATATTTC GAGAATGTCG AGGCGATCGC CGACGCAAAG
GCTGAGATTT TCTCAGGATT GGTGCCGGGC GGCGTCGCGA TCATCCATCG TGATATTCCG
CAGTTCGAGC GGCTGGCCGA GGCGGCGAGA CATTCGCCCG CCGGATTGAT CGCCAGTTTC
GGCACGCATG AGAAAGCCGA TGCGCGTCTT CTCGATCTGA CACCATCATC CGATCATTCG
ATGGTCAAGG CCTCCATCCA GGGAGAGACC CTGACTTATC GCCTTGGCGC GCCGGGCCGG
CATTTCGCGG AAAATTCCCT GGCTGTCCTG CTCGCCGCCA AGGCCTGCGG CGTCCCGCTC
GAGGATGCCG CCGCTGTCCT TGCCTTTTGC GCGCCCCAGG CCGGGCGCGG CCAGCAACTG
GTCCTGGAAG CGGGTGATGG CCCCTTCCGT CTCATTGATG AAAGCTATAA TGCCAATCCG
GCCTCCATGC GCGCGGCGTT GGAAATGGCC GGCACTTTGC CGTTGGAAGG GGTCGGCCGG
CGCATCGCCA TCCTGGGTGA TATGCTGGAA TTAGGCCCCC AGGCTCCGGA TTTACATGCT
CAATTGGCTG ATATCCTGCG TGAGGCATGT TTCGATCTCG TCTTCGCGGC GGGTCCCTTG
ATGCGGCATC TCTATGACGC GCTGCCGAGC GGTCTGCGCG GGGAATGGCG CGCGAAGGCC
GAGGATCTCG TGCCGATCGT CGGCGCCACG GTCCAGCGCA ATGATATTGT GCTTGTCAAA
GGCTCGAACG GCAGCCGCAT GAAACTGCTG GTCGAAAGCC TCAAGGACAA GGCGCGGCGG
GCGGGAGCGG AAACGGTCTA A
|
|---|
| Protein sequence | MNEILMPESV DKEILWTPLG LVTPLQARVS GHVPLRPARG ISIDTRTLRE DDLFFAIKGD
NSDGHDYVPA AFAKGAMAAV VDEAHADRLA AHGPLYVVHE VLPALERLGQ AARRRVEARV
VAVTGSVGKT STKEALRLVL TQGGSVHASV ASYNNHWGVP LTLARMPRDA RFGIFEIGMN
HPGEITPLVG MVRPHVAIIT TVAPVHLEYF ENVEAIADAK AEIFSGLVPG GVAIIHRDIP
QFERLAEAAR HSPAGLIASF GTHEKADARL LDLTPSSDHS MVKASIQGET LTYRLGAPGR
HFAENSLAVL LAAKACGVPL EDAAAVLAFC APQAGRGQQL VLEAGDGPFR LIDESYNANP
ASMRAALEMA GTLPLEGVGR RIAILGDMLE LGPQAPDLHA QLADILREAC FDLVFAAGPL
MRHLYDALPS GLRGEWRAKA EDLVPIVGAT VQRNDIVLVK GSNGSRMKLL VESLKDKARR
AGAETV
|
|---|
| |