| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bind_0382 |
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| Symbol | |
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| ID | 6199130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beijerinckia indica subsp. indica ATCC 9039 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010581 |
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| Strand | + |
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| Start bp | 440927 |
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| End bp | 442861 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641704374 |
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| Product | DNA ligase D |
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| Protein accession | YP_001831524 |
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| Protein GI | 182677378 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCTC TCGACACCCA TCACCAGAAA CGCGCGAAAG CATCACCCTT TTTAGATTCT
CTCGCCATCC AGGGAGCAAA AAAGGCCTCG CTGCCCGAAT TTGTCGAGCC GATGCTGGCG
AGCCTCTTAA CGGCCCCACC CGCTGGAAAA GACTGGATTC ATGAAATCAA ATTCGACGGC
TATCGCCTGC AGGCACGGAT CGAAGCCGGT CGCGTCAAAC TGTTGACCCG TCGTGGACTG
GATTGGACGC AGAAGTTCGG CCCAAAGATC GTGACTATCT TGCAGGCTTT GCCCGTGGAA
ACAGCTTTGA TCGATGGCGA ACTCGTGGTC GAGAACAGCT CCGGTGTCTC TGACTTTTCC
GCGCTGCAGG CGGCCTTAAG TGAGGGGCAG TTTGATCGCT TTCTCTTTTA TGCTTTCGAT
CTGCTTTATC TCGATGGCTA TGATCTGTGT GATTTGTCAC TAAGCAAACG CCGGGACATG
CTCGAACATC TTGTCGGCAG CGACGCTGGT CCTCTCCGCA TGAGCCAACG CTTTGAAGAA
GAGGGCCGTC TGGTCCTGCA GCATGCGTGT CGTCTCGGTC TCGAAGGCAT CATCTCCAAG
CGGAAGGAGA GTGTCTACCG ATCCGGACGT GGCAAGGATT GGATCAAATC GAAATGTTCG
GCGCGTCAGG AATTCGTCAT CGCCGGTTAT GTGCCCTCTT CCACGTCCCG CAAGGCGATC
GGTTCGCTTG TGCTCGGCGT CTATGACGGA GACAGGCTTG ATTATGTTGG CCGGGTCGGA
ACAGGTTTTA CAATGGCCAT CGCCGAGGAT CTCTTTCGCA AGCTCGAGGC GATGCAGATC
GACAAAAGGC CTTTCGCGAA ACCTCTGGCT TCGGCCGAAG CGCGTCATGT GCGCTATGTC
CATCCCGAGC TTGTTGCGGA GATTGAATTT TCTGGATGGA CCGCTGACGA ACGTCTTCGG
CACGCTTCGT TTCAAGGGCT GAGGGAAGAC AAAGATGCTC GGGAGGTTGT GCGCGAGGGG
TCAAGGAGCC TAACCTTCAC GGCAAAGCCA CAACGACGCC GGGCCGTATT CACGCATTCA
GACCGTATCT ATTGGCCGGA TGAGGGTGTG ACCAAGGAAG GCCTGGCGGA TTATTATACG
GAGGTCTGGC GGTTCATCGC TCCCTTTATC GTTGGGCGCC CTTTGGCTCT GCTTCGTTGT
CCGGATGGCA TTACTGGACC GCAATTCTTT CAAAAACATG CCTGGAAGAA GGTCTATTCC
CATCTGGTTC TGGTCAACGA TCCTAAAGAG AAATCGGAGC CTCTCCTCGC ACTTCATGAT
CTCGATGGTT TACTCGAGCT TGTGCAATCA GCTGTCCTGG AGATTCATCC CTGGCAATCC
ACCCTTACTG ACTGGGAACG GCCGGATCGA ATCATCATGG ATCTTGACCC TGGTGAAGGC
GTTCCATGGG AAATGGTTAT CGCGGCCGCC GAGGAGATGC GTGATCGTTT ACAGGAAGTT
GGCCTCGCGG CCTTTGTCAA AACATCGGGT GGCAAAGGCT TGCATGTCGT CTCGCCTCTA
AAACCGCTGG CGACTTGGCC CATGGTGAAG ACTTTCACCA AAACCCTGGC TGATGCCATG
GCCGCTGACA ATCCTGACCG TTTCATCTCA ACGAGCACCA AGAGCAAGCG GCAAGGCAAG
ATTTTCATCG ATTATCTGCG CAATCAACGA GGGATGACCG CTGTTGCTGC TTATTCGACC
AGGGCGCGGC CTGGAGCTTC TGTGTCGGTG CCTTTGGACT GGAAGGAGTT GAGCCCAAAT
ATCGGACCAG CCTATTTTAC GGTGGAGAAT ACACCGATCC GCTTGGCTGC ACTCACGGGA
GATCCATGGG CGGAGTTTCA GGCGGCTGCG GTTGCTCTCG AAGAGCCAAG ATCGACGAGA
CGCCGACATG GCTAG
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| Protein sequence | MAALDTHHQK RAKASPFLDS LAIQGAKKAS LPEFVEPMLA SLLTAPPAGK DWIHEIKFDG
YRLQARIEAG RVKLLTRRGL DWTQKFGPKI VTILQALPVE TALIDGELVV ENSSGVSDFS
ALQAALSEGQ FDRFLFYAFD LLYLDGYDLC DLSLSKRRDM LEHLVGSDAG PLRMSQRFEE
EGRLVLQHAC RLGLEGIISK RKESVYRSGR GKDWIKSKCS ARQEFVIAGY VPSSTSRKAI
GSLVLGVYDG DRLDYVGRVG TGFTMAIAED LFRKLEAMQI DKRPFAKPLA SAEARHVRYV
HPELVAEIEF SGWTADERLR HASFQGLRED KDAREVVREG SRSLTFTAKP QRRRAVFTHS
DRIYWPDEGV TKEGLADYYT EVWRFIAPFI VGRPLALLRC PDGITGPQFF QKHAWKKVYS
HLVLVNDPKE KSEPLLALHD LDGLLELVQS AVLEIHPWQS TLTDWERPDR IIMDLDPGEG
VPWEMVIAAA EEMRDRLQEV GLAAFVKTSG GKGLHVVSPL KPLATWPMVK TFTKTLADAM
AADNPDRFIS TSTKSKRQGK IFIDYLRNQR GMTAVAAYST RARPGASVSV PLDWKELSPN
IGPAYFTVEN TPIRLAALTG DPWAEFQAAA VALEEPRSTR RRHG
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