Gene BcerKBAB4_3920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcerKBAB4_3920 
SymbolxerD 
ID5844132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBacillus weihenstephanensis KBAB4 
KingdomBacteria 
Replicon accessionNC_010184 
Strand
Start bp3956520 
End bp3957410 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content37% 
IMG OID641379038 
Productsite-specific tyrosine recombinase XerD 
Protein accessionYP_001646716 
Protein GI163941832 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC
[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000317777 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGAAGATC AATTAAAAGA TTTTATTCAT TATATGATTG TTGAAAAAGG TTTAGCGAAA 
AATACAGTTG TATCTTATGA ACGCGATTTA AAAAGCTATG TGAAGTATTT GCAAAATGTA
GAACAAACGA AGACGTTTCA TGAAGTGACA CGCTTGCATA TTGTTAACTT TTTGCAGCAT
TTAAAAGAAA ACGGGAAATC TTCAAAAACA TTGGCGCGTC ATATTGCATC GATTCGTTCG
TTTCATCAAT TTTTACTTCG TGAACGAGCA GTGGAGCATG ACCCATCGGT ACATATTGAA
ACGCCACAAG GGGAACGGAA ATTACCAAAA GTATTATCAA TCGACGAAGT GGAAGCATTG
CTTCAAACAC CGAAAACGGC AAGTGCTTTT GGGATTCGTG ATAAGGCAAT GTTAGAGTTG
TTGTATGCAA CAGGACTTCG TGTTTCAGAA TTAATTGCAT TAAATTTAGA AGATGTGCAC
TTAACGATGG GATTTGTTCG CTGTATCGGG AAAGGGAACA AAGAAAGAAT TATTCCACTA
GGAAGCTTAG CGACAGAAGC GATTCAAAAG TATATTGAAA AAGGAAGAAG AGAATTGATG
GGTAAAAAAG CAGTAGATGC GCTCTTTTTA AACCATCATG GTAATCGATT ATCGAGACAG
GGATTTTGGA AAATTTTAAA ACGGCTAGCG AAAGAAGCGA ATATTGCAAA AGAGCTTACA
CCGCATACGT TGCGTCACTC TTTTGCTACG CATCTATTAG AAAATGGGGC AGACTTACGT
GCTGTACAGG AAATGCTTGG ACATGCAGAT ATTTCGACGA CACAAATTTA TACGCACGTT
TCAAAAACTA GATTAAAAGA TGTATATAAA CAGTTTCACC CGAGAGCATA G
 
Protein sequence
MEDQLKDFIH YMIVEKGLAK NTVVSYERDL KSYVKYLQNV EQTKTFHEVT RLHIVNFLQH 
LKENGKSSKT LARHIASIRS FHQFLLRERA VEHDPSVHIE TPQGERKLPK VLSIDEVEAL
LQTPKTASAF GIRDKAMLEL LYATGLRVSE LIALNLEDVH LTMGFVRCIG KGNKERIIPL
GSLATEAIQK YIEKGRRELM GKKAVDALFL NHHGNRLSRQ GFWKILKRLA KEANIAKELT
PHTLRHSFAT HLLENGADLR AVQEMLGHAD ISTTQIYTHV SKTRLKDVYK QFHPRA