Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BcerKBAB4_3920 |
Symbol | xerD |
ID | 5844132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bacillus weihenstephanensis KBAB4 |
Kingdom | Bacteria |
Replicon accession | NC_010184 |
Strand | - |
Start bp | 3956520 |
End bp | 3957410 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 641379038 |
Product | site-specific tyrosine recombinase XerD |
Protein accession | YP_001646716 |
Protein GI | 163941832 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000317777 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGAAGATC AATTAAAAGA TTTTATTCAT TATATGATTG TTGAAAAAGG TTTAGCGAAA AATACAGTTG TATCTTATGA ACGCGATTTA AAAAGCTATG TGAAGTATTT GCAAAATGTA GAACAAACGA AGACGTTTCA TGAAGTGACA CGCTTGCATA TTGTTAACTT TTTGCAGCAT TTAAAAGAAA ACGGGAAATC TTCAAAAACA TTGGCGCGTC ATATTGCATC GATTCGTTCG TTTCATCAAT TTTTACTTCG TGAACGAGCA GTGGAGCATG ACCCATCGGT ACATATTGAA ACGCCACAAG GGGAACGGAA ATTACCAAAA GTATTATCAA TCGACGAAGT GGAAGCATTG CTTCAAACAC CGAAAACGGC AAGTGCTTTT GGGATTCGTG ATAAGGCAAT GTTAGAGTTG TTGTATGCAA CAGGACTTCG TGTTTCAGAA TTAATTGCAT TAAATTTAGA AGATGTGCAC TTAACGATGG GATTTGTTCG CTGTATCGGG AAAGGGAACA AAGAAAGAAT TATTCCACTA GGAAGCTTAG CGACAGAAGC GATTCAAAAG TATATTGAAA AAGGAAGAAG AGAATTGATG GGTAAAAAAG CAGTAGATGC GCTCTTTTTA AACCATCATG GTAATCGATT ATCGAGACAG GGATTTTGGA AAATTTTAAA ACGGCTAGCG AAAGAAGCGA ATATTGCAAA AGAGCTTACA CCGCATACGT TGCGTCACTC TTTTGCTACG CATCTATTAG AAAATGGGGC AGACTTACGT GCTGTACAGG AAATGCTTGG ACATGCAGAT ATTTCGACGA CACAAATTTA TACGCACGTT TCAAAAACTA GATTAAAAGA TGTATATAAA CAGTTTCACC CGAGAGCATA G
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Protein sequence | MEDQLKDFIH YMIVEKGLAK NTVVSYERDL KSYVKYLQNV EQTKTFHEVT RLHIVNFLQH LKENGKSSKT LARHIASIRS FHQFLLRERA VEHDPSVHIE TPQGERKLPK VLSIDEVEAL LQTPKTASAF GIRDKAMLEL LYATGLRVSE LIALNLEDVH LTMGFVRCIG KGNKERIIPL GSLATEAIQK YIEKGRRELM GKKAVDALFL NHHGNRLSRQ GFWKILKRLA KEANIAKELT PHTLRHSFAT HLLENGADLR AVQEMLGHAD ISTTQIYTHV SKTRLKDVYK QFHPRA
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