Gene Bcer98_0286 details

Gene Information

• Locus tag: Bcer98_0286
• Symbol: ligA
• ID: 5344721
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bacillus cytotoxicus NVH 391-98
• Kingdom: Bacteria
• Replicon accession: NC_009674
• Strand: +
• Start bp: 328785
• End bp: 330794
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640837874
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001373644
• Protein GI: 152974127
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAAAG AGGCGGTACA ACAGCGTATA GAAGAACTTC GTGATCTTTT AAATACATTT 
AATTATCAAT ATCACGTATT AGACAATCCT TCTGTTTCTG ATGCGGAATA TGACCGCAAT 
ATGCAGGAGC TTATAAAATT AGAAACAGAA AACCCAGAAT TTATAACGGA AGACTCTCCC 
TCTGTTCGTG TTGGGGGAGC TGTCCTTGAT ATATTTGAAA AGGTAACGCA TAAATCACCG 
ATGTTAAGTT TAGGAAATGC ATTTAATGAA GGGGATTTAC GTGATTTTGA TCGCAGAGTT 
CGTCAAGGAA TTGATGGTGT AAATGTAAGA TATATTTGTG AATTGAAAAT TGACGGCCTT 
GCAGTTTCTC TTCACTATGA AAAAGGCCGC TTTATTCAAG GTTCAACACG AGGCGATGGT 
ATTACAGGCG AAGATATTAC ACAAAATTTA AAAACGATTA AGGCGATTCC TTTACGTTTG 
CAAGAAGAAG TAACGTTAGA AGTGCGAGGC GAGGCTTATA TGCCGAAGCG TTCATTTGTA 
AAATTAAATG AAGAGAAAGA GCAAAATGGC GAAGCTGTAT TTGCGAATCC TCGTAACGCA 
GCAGCAGGGT CTTTACGTCA ACTGGATCCA AAAATCGCAG CAAAACGTAA CTTATCTATG 
TTTGTATATG GACTAGCTGA TATAGAAGGA AAAACAATTA CATCTCATAG TGAAGCACTA 
GATTTCTTAG GAGAGCTAGG GTTTAAAACA AATCCGAATC GTCGCATCTG TGAGACAATT 
GAAGAAGTAA TTGCTTATGT AGAAGAATGG CAAGAAAAAC GTCCAAATCT TGATTATGAA 
ATTGACGGTA TCGTAATTAA AGTAGATGAT GTAACATTGC AAGAACGTTT AGGAACGACT 
GCGAAGAGTC CAAGGTGGGC AATCGCTTAT AAATTCCCAG CTGAAGAAGT TGTAACACGA 
TTAACTGGTA TCGAACTAAG TGTAGGACGT ACAGGGGTTG TAACACCAAC TGCAGAACTT 
GAACCAGTGC GAGTAGCTGG GACGATTGTT CGCCGTGCTT CTTTACATAA TGAAGATTTA 
ATTCGGGAAA AAGACATTCG CATTGGCGAT TATGTCGTTG TGAAGAAGGC GGGCGATATT 
ATTCCTGAGG TTGTGAATGT TGTTTTCGAT AAACGAACTG GTAAAGAAGA AGCATACCAT 
ATGCCAACGC ACTGTCCTAC TTGTGATAGT GGGCTTGTCC GCTTAGAAGA AGAGGTGGCT 
CTTCGCTGCA TTAATCCAGC TTGTCCAGCT CAAATTCGTG AAGGATTAAT CCACTTTGTA 
TCACGTAATG CGATGAATAT TGATGGGCTA GGAGAACGCG TTATCACACA GCTATTTGAA 
GCAAATTATA TTCGAACATT TGCGGACCTA TATGGTTTAA CGAAAGATCA GTTACTCCAG 
CTTGATCGCT TTGGTGAAAA ATCAGCTTCT AATTTAGTAC AAGCAATTGA AGCTTCGAAA 
GAAAACTCAT TAGAACGATT GTTATTTGGA TTAGGTATTC GCCATGTTGG AGCAAAAGCA 
GCACGAACAT TAGCTGAACA TTTTGAAACG ATGGATAATC TTGTGAAAGC TGGGGAAGAA 
GAATTAAAGG CGATTAATGA GATCGGTGAA AAAATGGCGC AATCTATTGT TACGTACTTT 
GATAATGAAG ATGTACTACA CTTAATTCAA CAGTTTAAAG ACTATGGCGT TAATATGACA 
TATAAAGGTA TAAAGCGTGC TGATTTGCAA AATATCGCAT CTTACTTTGC TGGAAAAACA 
GTTGTATTAA CAGGTAAACT AGAAGTTATG GGACGAAGTG AAGCAAAGAA AAAAATTGAA 
GCATTAGGCG GAAAAGTAAC GGGTAGTGTA AGTAAAAGTA CTGACCTTGT CATAGCAGGT 
GAAGCGGCTG GATCGAAATT AGCACAGGCA GAGAAACATA ATATTGAAAT TTGGAATGAA 
GAGAGGTTCT TACAAGAGCT GAATAAGTAA 

 

Protein sequence

MSKEAVQQRI EELRDLLNTF NYQYHVLDNP SVSDAEYDRN MQELIKLETE NPEFITEDSP 
SVRVGGAVLD IFEKVTHKSP MLSLGNAFNE GDLRDFDRRV RQGIDGVNVR YICELKIDGL 
AVSLHYEKGR FIQGSTRGDG ITGEDITQNL KTIKAIPLRL QEEVTLEVRG EAYMPKRSFV 
KLNEEKEQNG EAVFANPRNA AAGSLRQLDP KIAAKRNLSM FVYGLADIEG KTITSHSEAL 
DFLGELGFKT NPNRRICETI EEVIAYVEEW QEKRPNLDYE IDGIVIKVDD VTLQERLGTT 
AKSPRWAIAY KFPAEEVVTR LTGIELSVGR TGVVTPTAEL EPVRVAGTIV RRASLHNEDL 
IREKDIRIGD YVVVKKAGDI IPEVVNVVFD KRTGKEEAYH MPTHCPTCDS GLVRLEEEVA 
LRCINPACPA QIREGLIHFV SRNAMNIDGL GERVITQLFE ANYIRTFADL YGLTKDQLLQ 
LDRFGEKSAS NLVQAIEASK ENSLERLLFG LGIRHVGAKA ARTLAEHFET MDNLVKAGEE 
ELKAINEIGE KMAQSIVTYF DNEDVLHLIQ QFKDYGVNMT YKGIKRADLQ NIASYFAGKT 
VVLTGKLEVM GRSEAKKKIE ALGGKVTGSV SKSTDLVIAG EAAGSKLAQA EKHNIEIWNE 
ERFLQELNK