| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_B0140 |
|---|
| Symbol | |
|---|
| ID | 3751955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007511 |
|---|
| Strand | - |
|---|
| Start bp | 151658 |
|---|
| End bp | 153640 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637764986 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_370901 |
|---|
| Protein GI | 78060993 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.738564 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTCT CCTCGACCAA GCCCGTCGGC CCGGCCGATC GCGCGGTGCG CCCGCGCATC
TGGGCGATGG GCATCAGCCG CCTGCGCGAT CTCTTTCGCG AGATCGCCGG CGAATTCGAC
GAACGCGCCG ACGTGCGCAT CGTGACGCGC GCCTATGAGG ATGCGCTCAG CGCGATCGCC
GAGGCCGGCA CCGCGCGGCC CGACGTGATC GTCGCGGCCG GCTCGAACGG CGGCTTCCTG
AAAACGCGGG CGCAGGTGCC GGTGGTGGTG GTGTCGCCGA CCGGCTTCGA CGTGATGCAG
GCGCTTGCGC GCGCACGGCG CGACGCGTCG CGGATCGCAC TCGTCAGCGC CGGGGAAACC
CCGCCCGAAG TGCGTCGCTT CGTCGCCGCG TACAGCCTCG ACGTGCAGTT TGCGTCATAT
CAGTCTGCAC AGGAAGCGGA AGCCTGCGTG CACGAGCTGA GCGACCGCGG CATCGAGACG
ATCGTCGGCC CCGGCCTCGT CACCGATCTC GCGGCCAGCG CCGGCATGGG CGCGGTGTTC
CTGTATTCGC ACGCATCGGT ACGCAAGGCC GTCGATACGG CACTCGAAGT CGCGTATGCG
ACGCATGCCG AGGCATTCCG CCGCCAGCGG CTCGACAACC TGCTCCAGCA CCTGCGCGAC
GGCGTGGTCG CGCTCGACGC GCGCGGCCGT GTCGAGGCGA TCAACGAGCG GCTCGCGTCG
GCGCTCGGGG TCGAACCCGC GGCGGCCGTC GGCCGCGCGC TCGTCGACCT GCGGCCCGAG
CTGCGCACGC TGCGCGGCGA GGACGGCGAC GCGCTCGCGA CCGTGCGCGG CGTGCGCTAC
GTCGTGCATC GCGGGCCGCT CGTCGATCGC GGCGTCACGT CGGGCAGCGT GCTGACGTTC
CAGGAGTCGC GTGCGGTCGA ACGGCTCGAC CGCGCGCTGC GCTCGCAGCC CACCACGCAG
CAGTTCGCGG CGCGCTACGC GCTCGACGAC GTGGTCGGCG CATCGGCGCC GATGGCGCGC
GTGCGCGATC TCGTGCGCCG CTACGCGAAA TCCGATGCGA CCGTGCTCGT GCTCGGCGAA
AGCGGCACCG GCAAGGAAAT GATCGCGCAA AGCCTGCACG CGCTGTCCGC GCGGCGCAGC
TACCCGTTCG TCGCGGTCAA TTGCGGCGCG TTTCCGGAAG CGCTGCTCGA AAGCGAGCTG
TTCGGCTATG AGGAAGGCGC GTTCACCGGT GCGCGGCGCG GCGGCAAGAC CGGCCTGTTC
GAAGCCGCCC ACCGTGGCAC GCTGTTTCTC GACGAGATCG GCGAGATGCC GCCGTCGCTG
CAGAGCCGCC TGCTGCGCGT GCTGCAGGAG CGCGAGGTGA TCCGACTCGG CTCGACCGAG
CCGATCCGCA TCGACGTGCG CGTGATCGCC GCGACGCACC GCCCGCTGCT CGCGGCCGTA
GAAGCCGGCA CGTTCCGCGC GGATCTCTAT TACCGGCTCA ACATCCTGAA CGTCGGCCTG
CCGCCGCTGC GCGAGCGCGC CGCCGACATC CCGGCGCTCG CGGCCACGCT GCTCGTACAG
GCCGCGCGGC GCGAACCGCG CCTCGCCGAA CGCCTGCGCG ACGCCGCCGA TGCCGCACGC
GTGCTCGGCG TAACGCAGGC TGCGCTCGCA CGCTACCGGT GGCCCGGCAA CGTGCGCGAA
CTGCAGAACG TAATCGAACG GATCGCGGTG GAGCTGGCCG AGGAAGCCGA CGAAAGCGAT
CCGGCCGCCG CGTGCGGCGC GCTCGATCCC GACGCGCTGC TAGCGATCGC ACCCGAGCTG
TTCGCGGCAC CGCCCGACGC AGCCGACAGC GACGACGCGC AGACACTGCA AGCGCGCCGC
CGTCGCGCGG AAGCCGACGA GATCCGCGCG GTACTCGACG CATGCGGCGG CGACCGCGAC
CGCGCATGCG CAATGCTCGG CATCAGCAAG ACGACGTTGT GGCGGAAGTT GTCGGCGAAA
TAG
|
|---|
| Protein sequence | MDLSSTKPVG PADRAVRPRI WAMGISRLRD LFREIAGEFD ERADVRIVTR AYEDALSAIA
EAGTARPDVI VAAGSNGGFL KTRAQVPVVV VSPTGFDVMQ ALARARRDAS RIALVSAGET
PPEVRRFVAA YSLDVQFASY QSAQEAEACV HELSDRGIET IVGPGLVTDL AASAGMGAVF
LYSHASVRKA VDTALEVAYA THAEAFRRQR LDNLLQHLRD GVVALDARGR VEAINERLAS
ALGVEPAAAV GRALVDLRPE LRTLRGEDGD ALATVRGVRY VVHRGPLVDR GVTSGSVLTF
QESRAVERLD RALRSQPTTQ QFAARYALDD VVGASAPMAR VRDLVRRYAK SDATVLVLGE
SGTGKEMIAQ SLHALSARRS YPFVAVNCGA FPEALLESEL FGYEEGAFTG ARRGGKTGLF
EAAHRGTLFL DEIGEMPPSL QSRLLRVLQE REVIRLGSTE PIRIDVRVIA ATHRPLLAAV
EAGTFRADLY YRLNILNVGL PPLRERAADI PALAATLLVQ AARREPRLAE RLRDAADAAR
VLGVTQAALA RYRWPGNVRE LQNVIERIAV ELAEEADESD PAAACGALDP DALLAIAPEL
FAAPPDAADS DDAQTLQARR RRAEADEIRA VLDACGGDRD RACAMLGISK TTLWRKLSAK
|
|---|
| |