| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_A5972 |
|---|
| Symbol | |
|---|
| ID | 3751203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007510 |
|---|
| Strand | - |
|---|
| Start bp | 3101612 |
|---|
| End bp | 3103390 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637764291 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_370210 |
|---|
| Protein GI | 78067441 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0743128 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCTA CTTTTTCCCG TTCGTTGCCG CTCGTTGCGC TGGCTGTCGC CCTGATCGTG
CCGTACGCGA TCACGAATCA CACGTATCCG ATCCCGACTT TCTATTCCGA GTTTTCCGCG
CTGGTGCTGT ATCTGCTGGT GGGGGTGTCC GTCGTGCTGC TCGCGCGTAC GGGCCGCCCG
GCCGAGCCGT TTGCCGCGCC GGCCGCGTTC GTCGCGCCGC TCGGGTTCGC CGTGGTGCTC
ATCGCGCAGG TCGCGCTGAT CCCGCTCAAG GTGCCGTCGA TGAACTGGCT GGCGGTCGGC
TATCTCGCCG CCGCGCTGGT CGCGATGCAG GCCGGCTATA CGCTCGCGCG CGACGGGCTG
GCCGAGGCCG TGTCGCGGAT GATGGCCGGC GCGCTGCTTA TCGGCGGCGT GTTCGCGGTC
GGAACGCAAA TCGTGCAGTT GTTCCACCTC GAGTCGGCGC TGTCGCCGTT CGTCGTGATG
TACAACGTCG CGGTCGATCG CCGGCCGTAC GGCAACATGG CGCAGGCGAA CCATCTGGCC
AGCTACATTG CATTCGCGCT CGCGGGCGCG CTGTATCTCG TGCAGACGCG CCGGCTCGCG
GTGTGGGCGT GGCTCGTGCT GTCGATCGTG CTGTCGGTCG GCCTTGCGCT GACGGTGTCG
CGCGGGCCGT GGCTGCAGGT CGCGGTGATG GTCGTCGCGG GTTTCTGGAT GGCGTGGCTC
GAATCGCGCC GCGCGCCGGG CAATGCGCGC GCGTGGGCGA TCCCGGTCGT GCTTGCGGTG
GCGTTCATCG CGGTGAACGT CGCGGTGCGC TGGGCGAACG TCCACTACCA CCTGGGTCTC
GCGGAATCCG CGGCTGACCG GATGCGTGAC GCGGGGCAGA TCGCGCCGCG CCTCGCGCTG
TGGAAGTACG GGCTCGCGAT GTTCCGCGAG CATCCGCTGC TCGGTGTCGG CTGGGGCGAG
TTCCCGTCGC ACCAGTTCGC GCTCGTGCGC TCGCTCGGCG GCGTCGAGAT CGCGAACAAC
TCGCATGACA TCTTCATCGA CCTGCTCGCG AAGTCCGGCC TTGTCGGCCT CGGCGTGCTC
GTCGTCGCGC TCGTGACGTG GTTCGTGCGT GCAGTGCGCG CGCCGCAGTC GAGCATGCGC
GTGTTCGGCT TCGCGCTGAT CGGCATCCTG CTGATGCACG CGCTGGTCGA GTATCCGCAG
CAGTACATGT TCTTCCTGTT GCCGGCGATG TTCGTGATCG GGCTGCTCGA GGTGAAGCCG
CTGCGCATCC TGCCGGGGCG TGCGGCATTC GGGCTGTTCG CGGTGCTGTC GGTCGGCGGC
GTGCTGGCGG CGGTGCCGGT GTTGCGCGAC TACCAGCGCG CGGAAGTGCT GTACTACGGC
AGCGATCCGG CCGCGCAATA CCGCGATGCG CCGTCGCTGC TGTTCGGCGC GTGGGGTGAA
TACGGCGCGG CCACGCTGCT CCCGATTTCG GCGGATGACC TGCCGGCCAA GCTCGCTGCG
CATGAGCGTG CGATCGCGCT GCTGCCCGGC GAGACGGTGC TGCGCCGGTA TGCGGTGCTG
CAGGCGCTGG CCGGCCGCGA GGCCGACGCG CTCGACACCG TCGCGCACCT GCATGTGTTT
GCGAAGGAGT TGAAGGACTG GCCGCAGCAA TTGGCGGCGC TGTACAAGCT GTGCGACCAG
CAGCCGGCGC TGAAGCCGTT CAAGGCGGCA GTCGTCGCGA AGTACGGCGA AGTGCCGGCC
GATGCGGCCG ACGACGAGGA CGACGACGAT TCGGATTGA
|
|---|
| Protein sequence | MPSTFSRSLP LVALAVALIV PYAITNHTYP IPTFYSEFSA LVLYLLVGVS VVLLARTGRP
AEPFAAPAAF VAPLGFAVVL IAQVALIPLK VPSMNWLAVG YLAAALVAMQ AGYTLARDGL
AEAVSRMMAG ALLIGGVFAV GTQIVQLFHL ESALSPFVVM YNVAVDRRPY GNMAQANHLA
SYIAFALAGA LYLVQTRRLA VWAWLVLSIV LSVGLALTVS RGPWLQVAVM VVAGFWMAWL
ESRRAPGNAR AWAIPVVLAV AFIAVNVAVR WANVHYHLGL AESAADRMRD AGQIAPRLAL
WKYGLAMFRE HPLLGVGWGE FPSHQFALVR SLGGVEIANN SHDIFIDLLA KSGLVGLGVL
VVALVTWFVR AVRAPQSSMR VFGFALIGIL LMHALVEYPQ QYMFFLLPAM FVIGLLEVKP
LRILPGRAAF GLFAVLSVGG VLAAVPVLRD YQRAEVLYYG SDPAAQYRDA PSLLFGAWGE
YGAATLLPIS ADDLPAKLAA HERAIALLPG ETVLRRYAVL QALAGREADA LDTVAHLHVF
AKELKDWPQQ LAALYKLCDQ QPALKPFKAA VVAKYGEVPA DAADDEDDDD SD
|
|---|
| |