| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_A3808 |
|---|
| Symbol | secD |
|---|
| ID | 3748993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007510 |
|---|
| Strand | - |
|---|
| Start bp | 703166 |
|---|
| End bp | 705190 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637762088 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_368053 |
|---|
| Protein GI | 78065284 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGTT ATCCACTCTG GAAATATGTC GTGATGGTCG TGGCGCTCGC CATCGGCCTT
CTGTACACAT TGCCCAACTT CTTCGGCGAA TCGCCGGCGG TGCAGGTGTC GAGCGGCAAG
GCCACGGTCA AGCTCGACTC GACCACGCTG ACCCAGGTCG AATCGGCGCT CGCCTCCGCG
CAGATCACGC CGGACGACGT CACCTTCGAG AACACGGCGA CCAACGCGAA CATCCGCGTG
CGCCTGAAGG ACACCGATAC GCAGCTGCGC GTCAAGGACC TGCTGCAGAA GTCGCTGAAC
GCCGACCCGA ACGATCCGCA GTACGTCGTC GCCCTGAACC TGCAGAGCGC GTCGCCGCGC
TGGCTGACTG CCCTGCATGC GCTGCCGATG TATCTCGGCC TCGACCTGCG TGGCGGCGTC
CACTTCCTGC TCCAGGTCGA CATGACGGGC GCGCTGACGA AGAAGCTCGA TTCCGACGCG
TCCGACGCGC GCACGCTGCT GCGCGACAAG AACATCCGCG ACGGCGGCGT GAGCCGCGTC
GACCAGTCCG TGGTCGTCAA CTTCAGCGAT GCGCAGACGG CGGAAGACGC CCGCAAGGTG
CTCGCGCTGT CGATCACCGA ACTGCAATGG GCGACCCAGC CCGGCGGTGG CGGTACGCAA
GTCGTCGGCA CGTTCACGCC GGCCGTGCAG AAGTCCGTCG AGGACGCCGC GCTCAAGCAG
AACCTGACGA CGCTCCACAA CCGCGTGAAC GAACTCGGCG TGTCCGAGCC GATCCTGCAG
CAGCAAGGTA GCGACCGCAT CGTCGTCGAG CTGCCGGGCG TGCAGGACAC CGCGAAGGCG
AAGGACATCA TCGGCCGCAC CGCGACGCTC GAAGCGCGCC TCGCCGACCC GATCAACACG
CACCCGAACC CGAACGATCC GGTGCCGCCG GGTGAAGAGC TGTTCACGCA GGGCAACCAG
GCGCCGGTGC TGCTGAAGAA GGAAGTGATC TTCACGGGCG ACCGCATCAT CGATGCATCG
GCCGGCTTCG ACGATCACCA GCGTCCGTCG GTCAACATCC GCCTCGATTC GGCGGGTGGC
CGCTCGGTGC GCGCGGTGTC GCGCGAGAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC
GAGAAGGGCA AGGGCGAAGT GCTGACGGTC GCGACGATCC AGTCGGAACT CGGCGACCGC
TTCCAGATCA CGGGCCAGCC GACGCCGCAG GCTGCGGCCG ACCTCGCGCT GCTGCTGCGC
GCCGGTTCGC TCGCGGCTCC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC
GGCGCCGACA ACATCAAGAT GGGCGTCCAC TCGGTGATCT GGGGCTTCTG CGCGATCGCC
GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTGGTGT CGGTGATCGG CCTGTCGGTG
AACCTGCTGC TGCTCGTCGC CGTGCTGTCG CTGATGCAGG CGACGCTGAC GCTGCCCGGT
ATCGCCGCTA TCGCGCTCGC GCTCGGTATG GCGATCGACG CGAACGTGCT GATCAACGAG
CGCGTGCGTG AAGAACTGCG CGCCGGCCAG CCGCCGCAGA CCGCGATCCA GGCCGGCTAC
GCGCATGCCT GGGCGACGAT TCTCGACTCG AACGTCACGA CGCTGATCGC CGGCCTCGCG
CTGCTCGCGT TCGGCTCGGG CCCGGTTCGC GCGTTCGCGA TCGTGCACTG CCTCGGTATC
CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGGA TCGTCAACCT CTGGTACGGC
GGCCGCAAGA AGCTGAAGTC GCTCGCGATC GGCCAGGTGT GGAAGCCGGA AGGCGCCGCT
GCCGCCGCAT CGTTCTCCGA CGCAGACGAA TCGACCGACA CCGCACGTGC CGCGAAGCTC
GCCGCGCCCG CCAAGGGCAA CGCGCCGCGC GCCGCCGGCA AGCCGCAGCT GCGCAACCGC
GCGCAGCAAG GCGTGTCGCC GAAGAAACCG GGCTCGACCC AATAA
|
|---|
| Protein sequence | MNRYPLWKYV VMVVALAIGL LYTLPNFFGE SPAVQVSSGK ATVKLDSTTL TQVESALASA
QITPDDVTFE NTATNANIRV RLKDTDTQLR VKDLLQKSLN ADPNDPQYVV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARTLLRDK NIRDGGVSRV
DQSVVVNFSD AQTAEDARKV LALSITELQW ATQPGGGGTQ VVGTFTPAVQ KSVEDAALKQ
NLTTLHNRVN ELGVSEPILQ QQGSDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPINT
HPNPNDPVPP GEELFTQGNQ APVLLKKEVI FTGDRIIDAS AGFDDHQRPS VNIRLDSAGG
RSVRAVSREN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR
AGSLAAPMDI IEERTIGPSL GADNIKMGVH SVIWGFCAIA VFMIAYYMLF GVVSVIGLSV
NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDANVLINE RVREELRAGQ PPQTAIQAGY
AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGIVNLWYG
GRKKLKSLAI GQVWKPEGAA AAASFSDADE STDTARAAKL AAPAKGNAPR AAGKPQLRNR
AQQGVSPKKP GSTQ
|
|---|
| |