| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_A3244 |
|---|
| Symbol | |
|---|
| ID | 3748390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007510 |
|---|
| Strand | - |
|---|
| Start bp | 74771 |
|---|
| End bp | 77116 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637761507 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_367490 |
|---|
| Protein GI | 78064721 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.549479 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGAA ATCGCTTCGT TATGCGGCGT GTCGCCACGA CTCTGATCGT CGCCGGCATC
ATCGTCTCGC AGGCCGCCTA CGCTCAGGTC ACGCTCAACT TCGTGAATGC GGATATCGAC
CAGGTCGCCA AGGCGATCGG CGCCGCAACC GGCAAGACCA TCATCGTCGA CCCTCGCGTG
AAGGGGCAGC TCAACCTCGT GGCCGAACGG CCGGTGCCGG AAGACCAGGC ACTGAAGACG
CTGCAGTCGG CACTGCGCAT GCAGGGCTTC GCACTCGTGC AGGATCACGG CGTGCTGAAG
GTCGTGCCCG AGGCCGACGC GAAACTGCAG GGCGTGCCGA CTTACGTCGG CAATGCACCG
CAGGCGCGCG GCGATCAGGT GATCACGCAG GTGTTCGAGC TGCACAACGA ATCGGCGAAC
AACCTGCTGC CCGTGCTGCG GCCGCTGATC TCGCCGAACA ACACGGTCAC CGCCTACCCG
GCGAACAACA CGATCGTCGT GACCGACTAC GCGGACAACG TGCGGCGCAT CGCGCAGATC
ATCGCGGGCG TGGACAGCGC CGCGGGCGCG CAGGTGCAGG TCGTTCCGCT GCGCAACGCG
AACGCGATCG ATCTCGCCGC GCAGCTGCAG AAAATGCTCG ACCCGGGCGC GATCGGCAAC
AGCGACGCGA CGCTGAAGGT GTCGGTCACG GCCGACCCGC GGACCAACTC ACTGATGCTG
CGCGCGTCGA ACGCGTCGCG CCTGGCGGCT GCGAAGCGCC TCGTGCAACA GCTCGACGCG
CCGAGCGCGG TGCCCGGCAA CATGCACGTC GTGCCGCTGC GCAACGCCGA TGCGGTGAAG
CTCGCGAAGA CGCTGCGCGG GATGCTCGGC AAGGGCAGCG GCAGCGATAG CGGCTCGTCG
GCGTCGTCCA ACGATGCGAA CAGCTTCAAC CAGAGCGGCG GCTCGTCGTC GAGCGGCAAC
TTCTCGACCG GTACGTCCGG CACTCCGCCG CTGCCGTCGG GCGGCCTCGG CGGTTCGTCA
TCCTCGTCGT CGTACGGCGG CTCGTCCAGC GGTGGCGGGC TCGGCAGCGG CGGCCTGCTC
GGCGGCGACA AGGACAAGAG CGGTGACGAC AACCAGCAGG GCGGGATGAT CCAGGCCGAT
GCGGCGACCA ACTCGCTGAT CATCACGGCG TCCGATCCGG TCTACCGGAA CCTGCGCTCG
GTGATCGACC AGCTCGACGC GCGGCGTGCG CAGGTCTATA TCGAAGCGCT GATCGTCGAA
CTGGCCTCGA ACACGCAGGG CAACCTCGGC ATCCAGTGGC AGGTGGCGAG CGGCCAGTTC
CTCGGCGGCA CGAACCTGAA CCCTACGGCC GGCCTGGGCA ACAGCATCAT CAACCTGACG
GCGGGCGGTG TGACCAACGC TGCCGGCGGC ATCACCGGAG GCGGTCTGGC CGCCAACCTC
GGGTCGCTGA CCCAAGGGCT CAACATCGGC TGGCTGCACA ACATGTTCGG CGTGCAGGGT
CTCGGTGCGC TGCTGCAGTA TTTCGCGGGC GTGAGCGACG CGAACGTGCT GTCGACGCCG
AACCTGGTCA CGCTCGACAA CGAGGAAGCG AAGATCGTCG TCGGCCAGAA CGTGCCGATC
GCGACCGGCT CGTATTCGAA CCTGACGAGC GGCAATACAA ACAATGCGTT CAATACCTAT
GACCGTCGCG ACGTCGGCCT GACGCTGCAC GTGAAGCCGC AGATCACCGA AGGCGGGATC
CTGAAGCTGC AGCTCTACAC CGAGGATTCG GCTGTCGTCG CGGGCACCAC GAGCGCGCAG
ACTGGCCCGA CCTTCACGAA GCGCTCGATC CAGTCGACGA TTCTCGCGGA CAACGGCGAG
ATCATCGTGC TCGGCGGCTT GATGCAGGAC AACTACCAGG TGTCGAACAG CAAGGTGCCG
CTGCTCGGCG ACATCCCGTG GATCGGCCAG CTGTTCCGTT CCGAATCGAA GATCCGCGCG
AAAACTAACC TGATGGTGTT CCTGCGCCCG GTGATCATCT CCGATCGCAG CACCGCACAG
GAAGTCACGT CGAACCGCTA CGACTACATC CAGGGCGTGA CGGGCGCGTA CAAGTCGGAC
AACAACGTGA TCCGCGACAA GGACGATCCG GTCGTCCCGC CGATGCCGCT GGGCCCGAGC
CAGGGCGGCA CGCCGGCCGG CAACCTGTTT GATCTCGACA AGATGCGTCG CCAGCAACTG
CAGCGCCAGG TCGTGCCGGT GCCGGCCCAG CCGTTGCCGG AGGCAACGCC CGCGCAGCCG
CAGAGCGTGC CGCAGCAGGC GGTGCCGCAA CAGCCGCTGA CGGCCACGCC GGGAGCGTCG
CAGTGA
|
|---|
| Protein sequence | MTRNRFVMRR VATTLIVAGI IVSQAAYAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV
KGQLNLVAER PVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYVGNAP
QARGDQVITQ VFELHNESAN NLLPVLRPLI SPNNTVTAYP ANNTIVVTDY ADNVRRIAQI
IAGVDSAAGA QVQVVPLRNA NAIDLAAQLQ KMLDPGAIGN SDATLKVSVT ADPRTNSLML
RASNASRLAA AKRLVQQLDA PSAVPGNMHV VPLRNADAVK LAKTLRGMLG KGSGSDSGSS
ASSNDANSFN QSGGSSSSGN FSTGTSGTPP LPSGGLGGSS SSSSYGGSSS GGGLGSGGLL
GGDKDKSGDD NQQGGMIQAD AATNSLIITA SDPVYRNLRS VIDQLDARRA QVYIEALIVE
LASNTQGNLG IQWQVASGQF LGGTNLNPTA GLGNSIINLT AGGVTNAAGG ITGGGLAANL
GSLTQGLNIG WLHNMFGVQG LGALLQYFAG VSDANVLSTP NLVTLDNEEA KIVVGQNVPI
ATGSYSNLTS GNTNNAFNTY DRRDVGLTLH VKPQITEGGI LKLQLYTEDS AVVAGTTSAQ
TGPTFTKRSI QSTILADNGE IIVLGGLMQD NYQVSNSKVP LLGDIPWIGQ LFRSESKIRA
KTNLMVFLRP VIISDRSTAQ EVTSNRYDYI QGVTGAYKSD NNVIRDKDDP VVPPMPLGPS
QGGTPAGNLF DLDKMRRQQL QRQVVPVPAQ PLPEATPAQP QSVPQQAVPQ QPLTATPGAS
Q
|
|---|
| |