Gene Bcenmc03_6793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcenmc03_6793 
Symbol 
ID6125708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia MC0-3 
KingdomBacteria 
Replicon accessionNC_010512 
Strand
Start bp892161 
End bp894968 
Gene Length2808 bp 
Protein Length935 aa 
Translation table11 
GC content57% 
IMG OID641647803 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001774395 
Protein GI170735281 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.400617 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAACC GTATCAGATT GCCACGCCGG CTAGTTTTGA TATCGATTTT TGTTCTGCAA 
CTGCTTACGC TCGGAGCCAG TTGCTGGATT CTGTCGCGTA CCTGGGAAAA TGTGGAATTT
ATGTCGAATG TGACGATTAC CGAGGTTGAC GCGATCATGC AAACGACCGA GCACCTGTCA
GACGCACGCA TTACGCTTTC ACGAGCGGCC ACCCGGTGGG TGTTATCCGG CACTGTGCCG
TCTTCCTTCG TGCAGCACGC GCGTAACGAA ATCGATGCAG CCGGCCGCTC TTTCTTGATT
TTCCTAAATG CATTGCGCAA ACACGGCTCA AATGACAGCG TGGAGGGCCG TGTACGGAGC
CGGTCACTGA TAGACGCATA CTACCGATAC AGTAGAGCGT TGACCCAGCT CGTTGAATAC
CTTCAGTCGG GCGACCTGCA TGGATTCCTC GAGCAGCCGA CACAGGATGT GCAGGCTGCG
TTCCTTAATG AAGAGCGTCA ATTCCTGCAA TACGGCAGGG TTGTCGGCGC GGTTTCGGTG
TATGCAATGC ACGAGCGTTT CCGCCTTCTT GGAATCGCCT CAACGGTCAT GGCGATCCTG
CTCGCCGCGA CCGCGATTGC GTTCGTCGTC GCCAGACGAA GGGAGAAACT GAACCTGCTG
TCCCTTGCAT TGAATCACAC CGATAGCGCC GCAGTCGTGA CCACACCGGA CGGCCGGGTC
GTATACGCGA ACGAGGGATT CACGCAGATG TTGGGGTACA AGATGTCGGA GATACTCGGC
AAACGTCCGA CCGACTTCGT GGTCGGGCCT TATTCGGACT TCGGCACGGT CAGTGATATT
CGTGCGAAGG TGGGCGCTCA CCTGAGCTTT AAGACCAAGA TTCTCGTCTA TAGCAAGAGC
GGCCACCCGT TATGGATCCT GGCCACAGTC AATCCGGTGT TCGACGCAAG GGGCGTGTGC
AAGAACGTCG TCGGAATCTG GACTGACATT ACCAGTACGA AAATACACGA GGAGCTTCAG
CGCAAGGTGC TGGGCGCGAT GGCACGGGAA GAGCCTTTGG CCAATGTTAC GACACTTGTG
TGCCACGAAG CAGAGCGGAT CGCGCCGGCC GTGACGGCAT CGATCAGACG AATCGATGAC
GACGGTAAGC TATGGACGCT CGCGGCACCA AGCTTGCCGA TGGAATATGC GAGGGCGATT
GATGGGTTGC GTATCGCCCC CGACTTCGTA GAGCGGATCG CTGCGGGCCC GTTCGGCAGA
CACATTGCAT TTCCCACCAC ATCGCCGGAC GAAGCCTACG CATCGCACAG CGCGCTCGCA
ATCTCGTTTG GGTTCACGTC GTGCTGGTGG CATCCAATCC GGTCTACCGA TGGGCGCACG
CTCGGCACGC TCTCGTTCTA CTATCGCGAG TCACACCAAC CCAGTGCGCT TCATCAGGAG
CTTGTGGACG CCAGTCTGAA TTTGTGCGCG TTGGCATTGG AGCGAGAAGG AAGCAAGGAG
CGCATTCGCC GTCTCGCCTT CTATGACGGC CTGACCGGAT TACCTAATCG ACAGCTGCTG
ATGAGTCAAG CTGAGTCGGT GCTTGCCGCC GCCGTCGCGA GTCAGCATTC GTTCGCGGTG
ATGTTTGTCG ATCTCAACAG CTTCAAGCAG GTGAACGACA CGCTGGGGCA CGCGGCGGGA
GACGGTTTGC TGAGCGAAGT TGCACAGCGC CTCAAGATTG ACCTGCGCGA TACGGATATT
GTCGGTCGGC TGTCGGGCGA TGAGTTCGTG ATCGTTCTGT CACCGGCCGA CATTGAACTG
ACGCTCGACT TTGCGGAACG AACGATGAAC AGGTTGCGCC AGCCCGTCCA GATTAGTGAC
ACGAACCTGA GGCCCGCGGC GAGCATGGGC ATCGCGATCT TTCCGCAGCA CGGCGAGAGC
ATTGGTGCGT TGATGCAGCA TGCCGACATG GCCATGTATG AGGCGAAGTT CGCCGGACAC
CACGAGTATC GAGTCTTTGA GCCAGAACTG ATGCGTGCGA GGGAGGCGCG CCGGAAGCTC
GGGCTGGCAC TGCGCGACAG CCTCGTCGCG GGGGAGTTGC AACTTCACTA TCAGCCTCAG
GTGCGTCTGG ATGATGATAG TTTGTACGGA GTCGAAGCGC TTGCGCGCTG GTTTCATCGT
GATTTTGGCA ACGTGGCGCC GGACCATTTC ATCCCGCTTG TCGAGGAGTG CGGACTGGTT
GCGGAGTTCA ATCGATGGGT ATTGACCGAG GCGTGCCGGC AATTGGCGCA ATGGTGCGAA
GCCGGTCTAG ATGTTCCCCG GATATCGGTC AACATTTCGC CCACGGCGTT TCGCGATCCT
GCGTTCGCTT CCCTGGTAAG CAGTCTGCTG GGGACGTACA AACTTGCGCC TTCTCAGTTG
ACGCTTGAGG TCACCGAGGC CGTGTTGCTC GACGCGACGG ATAGCGTAAT GACAACTATT
CAAGACGTTC ATTCCCTCGG CGTCAATATG GCGATCGACG ATTTCGGTAC GGGGTACTCG
AGCCTCAGCT ATTTGCGGCG GTTGCCTGTG AACGAGGTGA AGCTGGACAA GAGCTTTATC
AGCAACGTTG AAAACAGCGA GAATGCGAGA TCGCTTGTCA ACTCGGTCGC CGACATCTGT
GCCAAGCTAC ATTTGACGAT CGTTGCCGAA GGCGTGGAAA CCGACGTTCA GCGACAGATA
CTTCAGGCAC GGGGCTACCA AGTCGCTCAA GGGTATCTCT TTTCGCCGCC TATTGAGGCG
GCCGAACTGC CAGTCTGGAT CAATGTGACT TTGTCTGGAC GCATATGA
 
Protein sequence
MFNRIRLPRR LVLISIFVLQ LLTLGASCWI LSRTWENVEF MSNVTITEVD AIMQTTEHLS 
DARITLSRAA TRWVLSGTVP SSFVQHARNE IDAAGRSFLI FLNALRKHGS NDSVEGRVRS
RSLIDAYYRY SRALTQLVEY LQSGDLHGFL EQPTQDVQAA FLNEERQFLQ YGRVVGAVSV
YAMHERFRLL GIASTVMAIL LAATAIAFVV ARRREKLNLL SLALNHTDSA AVVTTPDGRV
VYANEGFTQM LGYKMSEILG KRPTDFVVGP YSDFGTVSDI RAKVGAHLSF KTKILVYSKS
GHPLWILATV NPVFDARGVC KNVVGIWTDI TSTKIHEELQ RKVLGAMARE EPLANVTTLV
CHEAERIAPA VTASIRRIDD DGKLWTLAAP SLPMEYARAI DGLRIAPDFV ERIAAGPFGR
HIAFPTTSPD EAYASHSALA ISFGFTSCWW HPIRSTDGRT LGTLSFYYRE SHQPSALHQE
LVDASLNLCA LALEREGSKE RIRRLAFYDG LTGLPNRQLL MSQAESVLAA AVASQHSFAV
MFVDLNSFKQ VNDTLGHAAG DGLLSEVAQR LKIDLRDTDI VGRLSGDEFV IVLSPADIEL
TLDFAERTMN RLRQPVQISD TNLRPAASMG IAIFPQHGES IGALMQHADM AMYEAKFAGH
HEYRVFEPEL MRAREARRKL GLALRDSLVA GELQLHYQPQ VRLDDDSLYG VEALARWFHR
DFGNVAPDHF IPLVEECGLV AEFNRWVLTE ACRQLAQWCE AGLDVPRISV NISPTAFRDP
AFASLVSSLL GTYKLAPSQL TLEVTEAVLL DATDSVMTTI QDVHSLGVNM AIDDFGTGYS
SLSYLRRLPV NEVKLDKSFI SNVENSENAR SLVNSVADIC AKLHLTIVAE GVETDVQRQI
LQARGYQVAQ GYLFSPPIEA AELPVWINVT LSGRI