| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_6660 |
|---|
| Symbol | |
|---|
| ID | 6125582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010512 |
|---|
| Strand | + |
|---|
| Start bp | 728841 |
|---|
| End bp | 730337 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641647672 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001774269 |
|---|
| Protein GI | 170735155 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.958876 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGGC ACGGCCTGCG CATCGCGGCG ACGCTCGCTC CGCTTGCACT CGCACTCGGT
GCGTGCAAGT CGGTCGGCCC CGACTACAAG TTGCCGCAGC ACGCGTACGT CAATGCGCCG
CTGGCGAACC ATGCGCTCGA CGACGCGAAC GGTGCGCTGG TGTCGCGCGA CGCGGTGCCC
GGCAACTGGT GGCAGCTGTA CGACGACCCG GTACTCGACG GGCTCGTGCG CGATGCGCTG
AAGTCGAACA CCGACCTGCG CGTCGCCGCG GCCAACCTCG CCCGCTCGCG CGCGGCGCTG
GTGGTCGCGA ACGAACAGGG CGGATTCTCC GGCAGCGCGG AAGCGGCCGT GCAGCGCGCG
CAGGAATCGG CCGAGCAATA CCTGCTCGAA AACAAGCTGC CGGTCGTCAA CGAAGGCACG
GTCGGCATCA ACGTGTCGTA CGAGCTCGAC CTGTTCGGCA AGCTGCGGCG CGGCGTCGAA
GCCGCGCGCG CGGACAGCGA GGCCGTCAAG GCGGCCGGCG ACCTGGCGCG CATCACCGTC
GTGGCCGACG TCGTGCGCGC GTACGTCGAA GCGTGCTCGG CCGGCGACGA ACTGGCGATC
GCGAAGCAGT CGCTCGCGCT GCAGCAGCAG CGCGTGAAAC TGTCGCAACG GCTGCGCGAT
GCCGGACGCG GCAACCAGAC CGACGTGACC CGCGGCGTGA CGCAGGTACG CACGCTCTCC
GCCGACATCC CGCGCTTCGA AGGCCGCCGC AAGGTCGCGC AGTACCAGCT CGCCGCGCTG
CTCGCGCGCG CGCCGGCCGA CCTGCCGAAA GCCGCCGCCG AGTGCGAACG CCTGCCGAAG
CTGCGTCAGC CGATTCCGAT CGGCGACGGC GCCGCGCTGC TGCGCCGCCG CCCCGACGTG
CGCGAGGCCG AGCGGCAGCT CGCCGCCGCG ACCGCGCGGA TCGGCGTGGC GACCGCCGCG
CTGTACCCGT CGGTCAGCAT CGGTGCGTCG GCCGGGTCGG TCGGCGTCGC CGCCGACCTG
TTCTCGTCCA CCACGAATCG CTGGTCGTTC GGTCCGCTGA TCAGCTGGTC GTTCCCGGTC
ACCGGCCAGC GTGCGCGCGT GCGCGAAGCC GAAGCCGCGA CGGGCGGCGC GCTCGCGCAC
TTCGACGGCG TCGTGCTGAA CGCGTTGCGC GAAACGCAGT CGAGCCTCGC GACCTACGCG
GCCGACGTGC AGCGCACCGA TGCGCTGCGC ACCGCGTACG AGTCGGCCCG CAATTCCGCC
GACGAAACCC ATCGTCTCTA TGCGGCCGGC CGCGAATCGT TCATTTCCGA TCTCGACGCG
ACGCGCACGT TGACGAGTGT GCGGGCGCAG GTCGCGGCGG CCGAAGGCCA GGTCGCGGCC
GACCAGGTGC GGCTCTTTCT CGCGCTCGGC GGTGGATGGG ACGGCGACGG TGCGGCAGCC
GCCGCGGACG CCGGTTCCGC GGCCACGGCA CCCGCGGCCG GCCAGTCGAC GCCGTAG
|
|---|
| Protein sequence | MKRHGLRIAA TLAPLALALG ACKSVGPDYK LPQHAYVNAP LANHALDDAN GALVSRDAVP
GNWWQLYDDP VLDGLVRDAL KSNTDLRVAA ANLARSRAAL VVANEQGGFS GSAEAAVQRA
QESAEQYLLE NKLPVVNEGT VGINVSYELD LFGKLRRGVE AARADSEAVK AAGDLARITV
VADVVRAYVE ACSAGDELAI AKQSLALQQQ RVKLSQRLRD AGRGNQTDVT RGVTQVRTLS
ADIPRFEGRR KVAQYQLAAL LARAPADLPK AAAECERLPK LRQPIPIGDG AALLRRRPDV
REAERQLAAA TARIGVATAA LYPSVSIGAS AGSVGVAADL FSSTTNRWSF GPLISWSFPV
TGQRARVREA EAATGGALAH FDGVVLNALR ETQSSLATYA ADVQRTDALR TAYESARNSA
DETHRLYAAG RESFISDLDA TRTLTSVRAQ VAAAEGQVAA DQVRLFLALG GGWDGDGAAA
AADAGSAATA PAAGQSTP
|
|---|
| |