| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5894 |
|---|
| Symbol | |
|---|
| ID | 6128698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 3085651 |
|---|
| End bp | 3086136 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641652978 |
|---|
| Product | lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001779505 |
|---|
| Protein GI | 170738245 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.431421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0993718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAC GTCATTCGGC GCCGCCACGG CAGCGCCACT GGGTACCGCG CGCCGCGCTG
TGCGTGTGGC TGGCCTGCGC CGGCACGGCC GCGCACGCCG ATTGTTTCGA ATCGGCCGCC
GAGTATCACG GTGTCAACCC GATGATCCTG CGGGCCATCG CGAACGTCGA GTCGCGTGGC
AATCCGCAGG CGATCCACCG TAACAAGAAC GGCACGACCG ACATCGGCGA GCTGCAGATC
AATTCGATTC ACTTGCGCGA ACTGGCCGCC TTCGGGATTC GCGCCAAGGA TCTGCTCGAC
GAATGCGTGA ACGTCTACGT GGCCGCGTGG CACCTGCGCA AGCAGATTGC CGCCTATGGC
AATACCTGGG ACGCCGTCGG CGCCTATCAT TCGCGCAGCC CGCGCCTGCG GGACGAATAC
GCACGGCTCG TGAAGGCGAC GCTCGTGAAG TGGGGGGCGA TGACGATCGA CGGTGCGACG
CAATGA
|
|---|
| Protein sequence | MNQRHSAPPR QRHWVPRAAL CVWLACAGTA AHADCFESAA EYHGVNPMIL RAIANVESRG
NPQAIHRNKN GTTDIGELQI NSIHLRELAA FGIRAKDLLD ECVNVYVAAW HLRKQIAAYG
NTWDAVGAYH SRSPRLRDEY ARLVKATLVK WGAMTIDGAT Q
|
|---|
| |