| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5403 |
|---|
| Symbol | |
|---|
| ID | 6128213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | - |
|---|
| Start bp | 2528297 |
|---|
| End bp | 2529535 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641652493 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_001779020 |
|---|
| Protein GI | 170737760 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTCG ATTCCCGCCA GCTCGCGGCC CTCGCGCAGC AATACGGCAC CCCGCTGTGG
GTGTACGACG CCGACGTCAT CCGCGACCGC ATTGCCCAAC TTCGCCAGTT CGACGTGATC
CGTTATGCGC AGAAGGCGAA CTCGAACGTC CATATCCTGA AGCTGATGCG CGACGAAGGC
GCGTGCGTCG ACGCCGTGTC GCTCGGCGAG ATCGAGCGCA GCCTCGCGGC CGGGTTCAGT
CCCGCAGGCG AACCGGAAGG CGTCGTGTTC ACGGCCGACC TGATCGACCG CCCGACACTC
GCGGCGGTGC TCAAGCATGG CGTGACCGTG AACGCCGGTT CGCTCGACAT GCTCGCGCGC
ATCGGCGAGC ACGCGCCCGG CCACCGCGTG TGGCTGCGCG TCAACCCCGG GTTCGGCCAC
GGCCACAGCA ACAAGACCAA CACCGGCGGC CCGCAGAGCA AGCATGGCAT CTGGATCGAC
GACGTCCCGC GCGCGATCGA GATCGTGCGC CAGTACGGGC TGAAGCTGGT CGGCATCCAT
ATGCACATCG GTTCGGGCGT CGACTACGGC CACCTGTCGC AGGTATGCGA TGCGATGGTC
GACCTCGTCA CGTCGCTCGG CCACGACATC GACGCGATTT CGGCCGGCGG CGGCCTGTCG
ATCCCGTATC GCGACGGCGA GCTGCGCGTC GACGTCGGTC ACTACTTCAG CCAGTGGGAC
GCCGCGCGCA AGCGGATCGA ACGGCATCTC GGCCACCCGG TGCGCATCGA GATCGAACCG
GGCCGCTTCC TCGTCGCCGA AGCCGGCACG CTCGTCACCG AGGTGCAGGC CGTCAACCGT
CGGCCGAAGC ACGATTTCGT GCTGATCGAC GCCGGCTTCA ACGACCTGAT GCGCCCGTCG
ATGTACGGCA GCTATCACGC GGTGTCGGTG CACGCGCACG ATGGCGGGCT GCCCGCCGAC
CGGCCGCTCG TCGACCTCGC GATCGCCGGG CCGCTGTGCG AATCGGGCGA CGTGTTCACG
CAGGATGCCG GCGGCGTGGT CACGCACCGC AAGCTCGCGC AGCCGCAGAT CGGCGATCTG
CTGTTCCTGC ACGACGCGGG CGCGTACGGC GCGTCGATGT CGTCGAACTA CAACAGCCGG
CCGCTCGCGC CGGAGGTGCT GGTCGATCGC GGCACGCCGC GGTTGATCCG CCGCCGGCAG
ACGATCGGCG AACTGCTCGC GCTCGAAACG TTCGAGTAA
|
|---|
| Protein sequence | MSLDSRQLAA LAQQYGTPLW VYDADVIRDR IAQLRQFDVI RYAQKANSNV HILKLMRDEG
ACVDAVSLGE IERSLAAGFS PAGEPEGVVF TADLIDRPTL AAVLKHGVTV NAGSLDMLAR
IGEHAPGHRV WLRVNPGFGH GHSNKTNTGG PQSKHGIWID DVPRAIEIVR QYGLKLVGIH
MHIGSGVDYG HLSQVCDAMV DLVTSLGHDI DAISAGGGLS IPYRDGELRV DVGHYFSQWD
AARKRIERHL GHPVRIEIEP GRFLVAEAGT LVTEVQAVNR RPKHDFVLID AGFNDLMRPS
MYGSYHAVSV HAHDGGLPAD RPLVDLAIAG PLCESGDVFT QDAGGVVTHR KLAQPQIGDL
LFLHDAGAYG ASMSSNYNSR PLAPEVLVDR GTPRLIRRRQ TIGELLALET FE
|
|---|
| |