| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_5244 |
|---|
| Symbol | |
|---|
| ID | 6128055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 2342813 |
|---|
| End bp | 2343589 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641652335 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001778863 |
|---|
| Protein GI | 170737603 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.771046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.900169 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATTTGA ATCTGCAAGA CAAGGTCGTG ATCGTGACCG GCGGCGCGTC GGGTATCGGC
GCCGCGATCT CGATGCGGCT GGCCGGCGAA GGCGCGGTTC CCGTGGTGTT CGCGCGCCAC
GCGCCGGACG ACGGCTTCTG GCGCGAGCTC ACGCGGAAAC AGCCGCGCGC CGGGTGCGTC
ACTGTCGAAC TGCAGGACGA CGCACAGTGC CGCGACGGCG TCGCGCAGAC CCTCGCGCGC
TTCGGCCGTA TCGACGGCCT CGTCAACAAC GCGGGCATCA ACGACAGCAT CGGGCTCGAC
GCCGGGCGCG ATGCGTTCGT CGCGTCGCTC GAACGCAACC TGATCCACTA CTACGTGATG
GCGCACTACT GCGTGCCGCA CCTGAAGGCG GCGCGCGGCG CGATCGTCAA CATCTCGTCG
AAGACGGCCG TGACCGGGCA GGGCAACACG AGCGGCTATT GCGCGTCGAA GGGCGCGCAA
CTCGCGCTGA CGCGCGAATG GGCCGTCGCA TTGCGCAACG ACGGCGTGCG CGTGAACGCG
GTGATTCCGG CCGAGGTGAT GACGCCGCTC TATCAGAACT GGATCGCCGG CTTCGACGAT
CCGCAAGCGA AGGTCGCGGA AATTGCCGGC AAGGTGCCGC TCGGTCAGCG CTTCACGACG
GCCGACGAGA TCGCCGATAC AGCGGTGTTC CTGCTGTCGG AGCGTGCGTC GCACACGACG
GGCCAGTGGC TGTTCGTCGA CGGCGGCTAC ACGCATCTCG ATCGTGCGAT CAGCTGA
|
|---|
| Protein sequence | MDLNLQDKVV IVTGGASGIG AAISMRLAGE GAVPVVFARH APDDGFWREL TRKQPRAGCV
TVELQDDAQC RDGVAQTLAR FGRIDGLVNN AGINDSIGLD AGRDAFVASL ERNLIHYYVM
AHYCVPHLKA ARGAIVNISS KTAVTGQGNT SGYCASKGAQ LALTREWAVA LRNDGVRVNA
VIPAEVMTPL YQNWIAGFDD PQAKVAEIAG KVPLGQRFTT ADEIADTAVF LLSERASHTT
GQWLFVDGGY THLDRAIS
|
|---|
| |