| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_4562 |
|---|
| Symbol | |
|---|
| ID | 6127384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010515 |
|---|
| Strand | + |
|---|
| Start bp | 1550258 |
|---|
| End bp | 1551778 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641651659 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001778192 |
|---|
| Protein GI | 170736932 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.573494 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0249229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCGTT ACCGTCGTGC CGCACTCGTT CTGGCCGCGT GTCTGGGCAC CTTTCTCGCC
ACGCTCGACA TCAGCATCGT CAACGTTGCG TTACCGACGC TGCAGACGGC GCTCGATACC
GATATCGGCG GCCTGCAGTG GGTCATCAAC GCGTACGCGC TCGCGTTGTC CGCATTCATG
CTGTCGGCCG GCCCGCTCGG TGACCGCTAT GGTCACAAGC GCGTGTGGCT CGCCAGCGTG
ATCCTGTTCA CGGCCGGGTC GATCGTCTGC GCGTGTGCGG GCCGGATCGA GCCGCTGCTG
GCTGGCCGCG CGATCCAGGG GCTCGCCGGC GCGTTGCTGA TTCCCGGCGC GATGCCGATC
CTCACCCATG CGTTTCCCGA CGCGCGCGAA CGCGCCCGCG TGATCGGCGG ATGGTCGGCG
TTCAGCGCAC TCGCGCTGAT CGTCGGGCCG CTGCTGGGCG GCCTGCTGGT CGAGCATGGC
GGATGGCAGG ACATCTTTCT CGTCAACGTA CCGATCGGTA TCGTTGCCGT GCTGCTCGGC
ACCTGGGGCA TTCCGGAGCG GCGGCATCCG GAGCATGCGG CGTTCGATCC GTTCGGGCAG
GTGCTGAGCG TGGCGTGGCT CGGCCTGCTG ACCTACGGGC TGATCGGCAT CGGCGAAGTC
GGTACCTCGC ACGTGAAGGT GCTGGCGCCA CTGGCGGGCG CGGCGGTGGT GTTCGTCGTC
TTCGTCCGTG TCGAAACGCG TGTCGCGCGG CCGCTGCTGC CGGTGTGGCT GTTTCGCGAC
CGGCGGCTGG TGCGCGCGAA TCTCGCGTCG TTCGTGCTCG GGTTCTCGGG GTACAGCAGC
CTGTTCTTCC TGTCGTTGTT CCTGCAGCAG GCGCAGGGCC GTGCGCCCGC CGCAGCCGGG
TGGCAACTGA TGCCGCAGTT CGTGATGACG GCGATCACGT CGGTGCTGTT CGGGCGCATC
GCGGCGCGTA TCCCGTTGCG CGCGCTGATG GTGGCCGGAT ACGGGCTGAT CGGCGCGATG
CTCGTGGTGA TGGCCGGCTT CGGTGCGGCA ACCCCCTATG CGGCGCTCGG CGTGGTGCTG
GCGCTGCTCG GCGTCGGCAT GGGGCTCGCG GTGCCGGCGA CCGGCATGAC CGTGATGGAG
CTGGCGCCGG CGGAGCGCGC GGGCATGGCG TCGGCGACGA TGAACGCGTT GCGCCAGACC
GGGATGAGCC TGGGCATCGC GGTGCTCGGC AGCATGATGA GCGTGGGCGC GTTGCACCGG
ATGACGGCGG CGATGCACGC GGCGGGCAGT GCGCAAGCGG ATACGCTCGC GCGGCAGGCA
GTGATGGAGC ACATGTTCGT GGCTGGGCGA CCTGACATGC TCGGCGCGTA TCGGGATGCG
ATGGCGCACG GGTTTTCGAT CGCGATCCTG TGTTCCGGGA TCCTCAGTAT GGCGGTCGTG
GTGATGTTGA TGATGCGGCG TGAAAAGGAG CCGCGAATGG CCGTGTCGTG CGTGACGCCT
TCGCAGCCGG AACCGGAATG A
|
|---|
| Protein sequence | MSRYRRAALV LAACLGTFLA TLDISIVNVA LPTLQTALDT DIGGLQWVIN AYALALSAFM
LSAGPLGDRY GHKRVWLASV ILFTAGSIVC ACAGRIEPLL AGRAIQGLAG ALLIPGAMPI
LTHAFPDARE RARVIGGWSA FSALALIVGP LLGGLLVEHG GWQDIFLVNV PIGIVAVLLG
TWGIPERRHP EHAAFDPFGQ VLSVAWLGLL TYGLIGIGEV GTSHVKVLAP LAGAAVVFVV
FVRVETRVAR PLLPVWLFRD RRLVRANLAS FVLGFSGYSS LFFLSLFLQQ AQGRAPAAAG
WQLMPQFVMT AITSVLFGRI AARIPLRALM VAGYGLIGAM LVVMAGFGAA TPYAALGVVL
ALLGVGMGLA VPATGMTVME LAPAERAGMA SATMNALRQT GMSLGIAVLG SMMSVGALHR
MTAAMHAAGS AQADTLARQA VMEHMFVAGR PDMLGAYRDA MAHGFSIAIL CSGILSMAVV
VMLMMRREKE PRMAVSCVTP SQPEPE
|
|---|
| |