Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_3508 |
Symbol | |
ID | 6126343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | - |
Start bp | 380341 |
End bp | 382002 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641650616 |
Product | extracellular solute-binding protein |
Protein accession | YP_001777151 |
Protein GI | 170735891 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00360798 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGAATC CTTTCGTTTC GTCAGCCGCG CGCCAATCGC GCGGCGTATC GCCCGCCGGC GCCGCGCTTC GCTGCATCGC CGCGTCGTTG CTGCTGGCCG GCGCCGCGAC GCACGCGTTT GCGGCGCCCA CGGGCAAGAC GCTCGTGTAC TGCACCGAAG GCAGCCCGGC CGGCTTCGAT CCCGGCCAGC ACACGACGAG CACCGATTTC GATGCGAGCA CGTACCCGGT CTACAACGGG CTCGTGCAAT TCAAGCGCGG CACGCTCGAC CTCGAACCGG CGCTCGCGAC GAGCTGGGAC GTGTCGCCCG ACCAGCGCAC GATCACGTTC CACCTGCGGC GCGGCGTGAA ATTCCAGACG ACCGCATGGT TCAAGCCGAC GCGGCCGTTC CAGGCCGACG ACGTCGTGTT CACGTTCCGC CGGATGCTCG ACCCGGACGA TCCGTTCCGC AAGGCGTATC CGGTCAGCTT CCCGTATTTC AGCGATCTCG GCTTCGACCA CAACATCGAA CGCATCGAGA AGGTCGACGA CTATACGGTG CGCTTCGTGC TGAAGTCGCC CGACGTCGTG TTCGTGCGCA ATCTCGCGAT GGCGTTCGCG TCGGTGCTGT CGGCCGAATA TGCGGGGCAG CTCGCCGCGC GCCATCGCGA GTCGGACATC AACCAGTTCC CGGTCGGCAC GGGGCCGTTC GTGTTGCGTA CGTACCAGAA GGATGCGCTG ATCCGCTACG ACGCGAATCC CGACTACTGG AAGCCGGACG ACGTGAAGCT GTCCCGCCTC GTGTTCGCGA TCACGCCCGA TCCGGCCGCG CGGCTGCAGA AGCTCGTGGC CGGCGAGTGC CAGGTATCGG CGTTTCCGCG GCCGGCCGAT CTCGAGACGG TGCGGCGCGA CCCGAAGCTG ACGCTGTTTT CCGGGACGGG TTTCAACGTC GGCTTCGTCG CGTACAACAC GCAGCATCCG CCGCTCGATC GCGTCGACGT GCGGCGCGCG CTCGACATCG CGATCGACAA GACGGCGATC ATCAAGACCG TGTTCAACGG CGACGCGACG GTCGCGACGA ACCCGATGCC GCCCGCGCAA TGGTCGTACA ACCCGCGGCT GAAGGATGCG CCGCGCGATC CGGCCGTCGC GAAGGCGCTG CTCGCGCAGG CCGGCTTCCC GAACGGTTTC GACCTGACGC TGTGGGCGAT GCCCGTGCAG CGCCCGTACA ACCCGAACGC GCAACTGATG GCGCAACTGA TCCAGCAGGA CTGGGCGAAG ATCGGCGTGC GCGCGAAGAT CGTCAGCTAC GAATGGGGCG AGTACAACCG CCGCGCGAAG CACGACGGCC AGCACGACGC GATCCTGTAC GGCTGGTCGG GCGACAACGG CGACCCCGAC AACTGGCTCG GCACGCTGCT CGGCTGCGAG GCGGTGCACG GCAGCAATCT CGCGAAGTGG TGCAACAAGG ACTTCGAGCA GCTCGTGACC GCCGCGCGTT CGAACGGGGA CGTCGCGAAG CGCACGGCGC TGTACGAGCA GGCGCAGGTG GTGTTCAAGG ATCAGGTGCC GTTCACGCCG ATCGCGACGT CGATCGTGTC GTTGCCGATC TCCAGACGCG TGCACGGGCT GACGTTCTCG CCGCTCGGCG GGCACCGGTT CGACGGTGTG TGGCTCGATT GA
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Protein sequence | MKNPFVSSAA RQSRGVSPAG AALRCIAASL LLAGAATHAF AAPTGKTLVY CTEGSPAGFD PGQHTTSTDF DASTYPVYNG LVQFKRGTLD LEPALATSWD VSPDQRTITF HLRRGVKFQT TAWFKPTRPF QADDVVFTFR RMLDPDDPFR KAYPVSFPYF SDLGFDHNIE RIEKVDDYTV RFVLKSPDVV FVRNLAMAFA SVLSAEYAGQ LAARHRESDI NQFPVGTGPF VLRTYQKDAL IRYDANPDYW KPDDVKLSRL VFAITPDPAA RLQKLVAGEC QVSAFPRPAD LETVRRDPKL TLFSGTGFNV GFVAYNTQHP PLDRVDVRRA LDIAIDKTAI IKTVFNGDAT VATNPMPPAQ WSYNPRLKDA PRDPAVAKAL LAQAGFPNGF DLTLWAMPVQ RPYNPNAQLM AQLIQQDWAK IGVRAKIVSY EWGEYNRRAK HDGQHDAILY GWSGDNGDPD NWLGTLLGCE AVHGSNLAKW CNKDFEQLVT AARSNGDVAK RTALYEQAQV VFKDQVPFTP IATSIVSLPI SRRVHGLTFS PLGGHRFDGV WLD
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