Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_3254 |
Symbol | |
ID | 6126233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010515 |
Strand | - |
Start bp | 79276 |
End bp | 80496 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641650365 |
Product | porin |
Protein accession | YP_001776900 |
Protein GI | 170735640 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.238701 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAAGC GCGTCGCTTT CGCCATGACG GCAGTCGGTC TCGCAGCCGC TACCGCCGCC CACGCCCAGA GCAGCGTGAC CCTGTACGGT ATCGTCGACA ACGGTATCGC TTGGCAGAAC AACTCGTCGG CAGTCGGCGC AACCTCGGGT GGTCACTCGA AGGTGCAGAT GTCCACCGGC GTGTGGGCAG GCAGCCGCTT CGGCCTGAAG GGCAGCGAAG ATCTCGGCGG CGGCACGAAG GCGATTTTCC AGTTGGAAGC CGGCGTCAAC ACGGCTAACG GCTCGTCGCA GTGGACCAAC GGCATCTTCA CGCGTCAGGC ATGGGTTGGC CTGACCAACG CCACGTACGG TACGCTGACG GCCGGCCGCC AGTACACCGC GTACTACACG CTGCTGTCGC CGTACAGCCC GACGACCTGG CTGACCGGTT ACTACGGCGC GCACCCGGGC GATATCGATT CGCTGGATAC CAGCTACCGC GCGAACAACT CGCTCGTCTA CATGTCGCCG AAGTTCTACG GCTTCACGGT CGGCGGTTCG TACTCGTTCG GCGGCGTCGC GGGCGCGACG AACCGCGGCT CGACGTGGAG CGCGGCGATC CAGTACCTGA ACGGCCCGGC AGGCATCGCG GTCGGCTATC AGAAGGTCAA CAACTCGACG CTCGGCGGCG GCGTGTGGGG CGCGAACTCG ACGGTCCAGA ACGGCCTGAC GGCAGCAGGC GACGGCAACC AGCCGGCAGT CTCGTCGATC AACAACGGCT ACGCGACCGC GCAATCGCAG CAGCGTATCG CCGTGACGGC GGGCTACCAG TTCACGCCGG CATGGGATAT TTCGGCGTCG TACTCGAACG TCCAGTACAC GCCGGGCACG GGTTCGTTCT TCCGGAACAA GGCAATCTTC AACACGGCTG GCGCCGTGCT GCACTGGAAG GCAGCTGCTC AGTGGGACTT CGCGGCAGGC TACTCGTACA CGGCCGCAAC GCAGTCGAAC GGCATCACGA GCTCGGCCAA GTACCACCAG GTCACGCTGT CGCAGTACTA CAGCCTGTCG AAGCGCACGG GCCTGTACGC GGTTGAGGCT TACCAGCACG CAAGCGGCAA CACGCTGAAC GGCCGCGGCA ACGCAATCAT CTCGGCGACC ACGTCGATCG GTGACGGCGT GGGCGCAGGT TCGAAGCAGA ACCAGATCGG CGTCGGCGTC GGCATGATCC ACCGCTTCTA A
|
Protein sequence | MKKRVAFAMT AVGLAAATAA HAQSSVTLYG IVDNGIAWQN NSSAVGATSG GHSKVQMSTG VWAGSRFGLK GSEDLGGGTK AIFQLEAGVN TANGSSQWTN GIFTRQAWVG LTNATYGTLT AGRQYTAYYT LLSPYSPTTW LTGYYGAHPG DIDSLDTSYR ANNSLVYMSP KFYGFTVGGS YSFGGVAGAT NRGSTWSAAI QYLNGPAGIA VGYQKVNNST LGGGVWGANS TVQNGLTAAG DGNQPAVSSI NNGYATAQSQ QRIAVTAGYQ FTPAWDISAS YSNVQYTPGT GSFFRNKAIF NTAGAVLHWK AAAQWDFAAG YSYTAATQSN GITSSAKYHQ VTLSQYYSLS KRTGLYAVEA YQHASGNTLN GRGNAIISAT TSIGDGVGAG SKQNQIGVGV GMIHRF
|
| |