| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_1668 |
|---|
| Symbol | |
|---|
| ID | 6123344 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia MC0-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010508 |
|---|
| Strand | - |
|---|
| Start bp | 1859776 |
|---|
| End bp | 1861239 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641638249 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001764963 |
|---|
| Protein GI | 170733016 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.339414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCC AATCCCTCGA CCTCGGCGGC CATGCCGGCG GCCCAGAATC CGCCCGGCCG
CCGGCCGCTT CAGCAGGCGC CGGCGCCGAT GCGGCAGCCC TTCCCGGCCG CCGCGTCACG
CTCGGCGATT TCATGGACGA TCTGCCGGTC GGCGCATTGC ATCGATTCGT CGTCTGGGTA
ATCGGCGTCG GGCTGTTCTT CGACATGTAC GAGATTTTTC TCGTCAGTAC GATCGGCTCC
GCGTTGCAGC ACGAATACGG GCTGAGCCGG CAAAGCGCCG ATTTCAAGCT ATTGCTGGCG
TCGGCGTTCA TCGGCATGTT CGTCGGCGCG ATGTGCCTCG GCAGCCTGGC CGACCGCATC
GGCCGGCGCA AGGCGTTCCT GCTCACGCTC GGGTGGTACA GCGCGTTCTC GCTGGTCGGT
GCGTTTTCCG TGAACGCCGA CATGCTCGTG GCATGCCGGT TCCTGACGGG CATCGGCGTC
GGCGCGATCT ATCCGGTCGC CGACAGCTTC CTGTCCGAAA TCCTGCCGAA GGACAAGCGC
GGGCGGCTCG CCGCGTGGGC CTACACGACT TCGTATGTCG CGGTGCCGCT CGTCGGCTTT
CTCGCGCTGT GGCTGAATCC GTTGCAGGTG GCGGGCGTCG CCGGCTGGCG CATCATCCTC
GCGATCGGCA GCCTCGGCGC CGTGTACGTG CTGCTCGTCC AGCACCGGCT GCCGGAAAGT
CCGCGCTGGC TGCTCGCGCA AGGCCGCACG GCCGATGCGC ACGCGGCGCT GCGGCGTTTC
GCGGAAAGCG CCGGCGTGCG TGTGCCCGAA CACTTCGCGG AACCGGTCGA GCCACAGCGG
CCGCTCGGGC TCGGCGAGCG CATCGCGCTG CTGCGCCGCC AACCGTACGG CGCGCGCTAT
GTGATGCTGG CGATCTTCCA CCTGTTGCAG GGCTTCGGCT ACTACGGGTT CGGCACGCTC
GCCGGCACGG TCGTGAAAAG CCGCGGCTTC GACGTGACGG ACAGCACGCT GTTCATCGCG
CTGTCGTTCA TCGGCTATCC GATCGGTTCG CTGCTGTCGA TTCCGCTGCT CAACTGGATC
GAGCGCCGCA CACTCGTGAT CGTGTCGATC CTGTCGATCG CGGTGTCCGG GCTGTGCTTC
GCGTATTCGG CCAATACGGT GCTGATCGTC GGCTTCGGGT TCCTGACGAC CTGTGCATCG
AATGTGTTCA GCAACGCGTA TCACGTGTAC CAGGCCGAGA TTTTCCCGGC GCGCGTGCGC
TCGACGGCGA TCGGCAGTAC CTATGCGCTG TCGCGGATCG TGAGCGGCGC GCTGCCGTTC
GTGTTGCTGC CGGTGCTCGG CCACTACGGC GCGAGCGCGA TGTTCGGCGT GATCTCGGTC
GCACTCGGCA TCGTCGCCGT CACGCTGCGC GTGCTCGGGC CGCTGACCAC GCGGCGCAGT
CAGGACGAGA TCAATCCGGT TTGA
|
|---|
| Protein sequence | MNSQSLDLGG HAGGPESARP PAASAGAGAD AAALPGRRVT LGDFMDDLPV GALHRFVVWV
IGVGLFFDMY EIFLVSTIGS ALQHEYGLSR QSADFKLLLA SAFIGMFVGA MCLGSLADRI
GRRKAFLLTL GWYSAFSLVG AFSVNADMLV ACRFLTGIGV GAIYPVADSF LSEILPKDKR
GRLAAWAYTT SYVAVPLVGF LALWLNPLQV AGVAGWRIIL AIGSLGAVYV LLVQHRLPES
PRWLLAQGRT ADAHAALRRF AESAGVRVPE HFAEPVEPQR PLGLGERIAL LRRQPYGARY
VMLAIFHLLQ GFGYYGFGTL AGTVVKSRGF DVTDSTLFIA LSFIGYPIGS LLSIPLLNWI
ERRTLVIVSI LSIAVSGLCF AYSANTVLIV GFGFLTTCAS NVFSNAYHVY QAEIFPARVR
STAIGSTYAL SRIVSGALPF VLLPVLGHYG ASAMFGVISV ALGIVAVTLR VLGPLTTRRS
QDEINPV
|
|---|
| |