Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcenmc03_0688 |
Symbol | secD |
ID | 6122369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia MC0-3 |
Kingdom | Bacteria |
Replicon accession | NC_010508 |
Strand | - |
Start bp | 753246 |
End bp | 755267 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641637251 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001763988 |
Protein GI | 170732041 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.70509 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTT ATCCACTCTG GAAATATGTC GTGATGGTCG TGGCGCTCGC CATCGGCCTT CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG GCCACGGTCA AGCTCGACTC GACCACGCTG ACCCAGGTCG AATCGGCACT CGCGTCCGCG CAGATCAAGC CGGACGACGT CACCTTCGAG AACACGGCGA CCAGCGCGAA CATCCGCGTG CGCCTGAAGG ACACTGATAC GCAGCTGCGC GTCAAGGACC TGCTGCAGAA GTCGCTGAAT GCCGACCCGA ACGATCCGCA GTACGTCGTC GCACTGAACC TGCAGAGCGC GTCGCCGCGC TGGCTGACCG CCCTGCACGC GCTGCCGATG TATCTCGGCC TCGACCTGCG CGGTGGGGTG CACTTCCTGC TCCAGGTCGA CATGACGGGC GCGCTCACGA AGAAGCTCGA CTCCGACGCG TCCGACGCGC GCTCGCTGCT GCGCGACAAG AACATCCGCG ACGGCGGCGT GAGCCGCGTC GAGCAGTCCG TGGTCGTCAA CTTCAGCGAT GCGCAGACGG CGGAAGACGC CCGCAAGGTG CTCGCCGCGT CGATCACCGA GCTGCAATGG GCGACCCAGC CCGGCGGCGG CGGCACGCAA GTCGTCGGCA CCTTCACGCC GGCCGTGCAG AAGTCGGTCG AGGACGCCGC GCTCAAGCAG AACCTGACGA CGCTCCACAA CCGCGTGAAC GAGCTCGGCG TGTCCGAGCC AATCCTGCAA CAGCAAGGCA GCGACCGCAT CGTCGTCGAA CTGCCGGGTG TGCAGGACAC CGCGAAGGCG AAGGACATCA TCGGCCGCAC CGCGACGCTC GAGGCGCGCC TGGCCGACCC GATCAACACG CACCCGAACC CGAACGACCC CGTGCCCCCG GGCGAGGAGC TGTTCACGCA GGGCAGCCAG GCGCCCGTGC TGCTGAAGAA GGACGTGATC TTCACCGGCG ACCGCATCAT CGACGCGTCG GCCGGCTTCG ACGAACACCA GCGTCCGTCG GTCAACATCC GCCTCGATTC GGCGGGCGGC CGCGCGGTGC GCACGGTGTC GCGCGACAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC GAGAAGGGCA AGGGCGAAGT GCTGACGGTC GCGACGATCC AGTCGGAACT CGGCGACCGC TTCCAGATCA CGGGCCAGCC GACGCCGCAG GCCGCGGCCG ACCTCGCGCT GCTGCTGCGC GCCGGTTCGC TCGCCGCACC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC GGCGCCGACA ACATCAAGAT GGGCGTCCAC TCGGTGATCT GGGGCTTCTG CGCGATCGCC GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTGGTAT CGGTGATCGG CCTGTCGGTG AACCTGCTGC TGCTCGTCGC CGTGCTGTCG CTGATGCAGG CGACGCTGAC GCTGCCCGGT ATCGCGGCCA TCGCGCTCGC GCTCGGTATG GCGATCGACT CGAACGTGCT GATCAACGAG CGCGTGCGTG AAGAACTGCG CGCCGGCCAG CCGCCGCAGC TCGCGATCCA GGCCGGTTAC GCGCATGCGT GGGCGACGAT TCTCGACTCG AACGTCACGA CGCTGATCGC CGGCCTCGCG CTGCTCGCGT TCGGCTCGGG CCCGGTTCGC GCGTTCGCGA TCGTGCACTG CCTCGGCATC CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGGC TCGTCAACCT CTGGTACGGC GGCCGCAAGA AGCTGAAGTC GCTCGCGATC GGCCAGGTGT GGAAGCCGGA AGGCGCCGCT GCCGCCGCGT CGTTCACCGA CGAGGACGAA TCGACCGACA CCGCGCGCGC CGCGAAGCTC GCCGCCCCGG CGAAGGGCAA CGCGCCGCGC GCCGGCAAGC CGCAGCTGCG CAACCGCGCG CAGCAAGGCG TGTCGCCGAA GAAACCGGGC TCGACCCAAT AA
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Protein sequence | MNRYPLWKYV VMVVALAIGL LYTLPNFFGE APAVQVSSGK ATVKLDSTTL TQVESALASA QIKPDDVTFE NTATSANIRV RLKDTDTQLR VKDLLQKSLN ADPNDPQYVV ALNLQSASPR WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARSLLRDK NIRDGGVSRV EQSVVVNFSD AQTAEDARKV LAASITELQW ATQPGGGGTQ VVGTFTPAVQ KSVEDAALKQ NLTTLHNRVN ELGVSEPILQ QQGSDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPINT HPNPNDPVPP GEELFTQGSQ APVLLKKDVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG RAVRTVSRDN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR AGSLAAPMDI IEERTIGPSL GADNIKMGVH SVIWGFCAIA VFMIAYYMLF GVVSVIGLSV NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RVREELRAGQ PPQLAIQAGY AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG GRKKLKSLAI GQVWKPEGAA AAASFTDEDE STDTARAAKL AAPAKGNAPR AGKPQLRNRA QQGVSPKKPG STQ
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