| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcenmc03_0447 |
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| Symbol | |
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| ID | 6122128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia MC0-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010508 |
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| Strand | + |
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| Start bp | 485054 |
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| End bp | 485557 |
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| Gene Length | 504 bp |
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| Protein Length | 167 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641637004 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001763747 |
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| Protein GI | 170731800 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0406517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.642596 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTACATA TGCACTTGCA GTTTGGTAGT CCCGCGGTGA AGGGCGAATC CGCGGATAAA
GACCACCAGG GCTGGATCGA ACTGAAATCG TGGGATCACT CGATCGTTCA GCCGCGTTCG
GCAACCGCAT CGACCGCTGG CGGTCACACG ATGACGCGTT GCGAGCACGG CGACATGATC
TTCACGAAGG AAATCGATTC GTCGAGCCCG CTGCTGTATC AGCACGCTTC GGGCGGTACC
ACGTTCGACG AAGTGACGGT CCATTTCTCG CGCGCGGACG GTGAAGGCAA GCGCGTGCAG
TATCTGGAAG TCAAGCTCAA GTACGTGATC ATCTCGAGCA TCGCGCCGAG CGTTCGCGAG
GAAGGTCTGC CGCTCGAGAC GTTCTCGCTG AAGTACGCAG CCGTGCAGTG GAAGCAAACC
CAGCAGAAGA TCGGCGGCAA CCAGGGCGGC AACACGCAAG GCGCCTGGAG TCTGACGAAG
AACGACAAGA CCTACGCGGT CTAA
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| Protein sequence | MLHMHLQFGS PAVKGESADK DHQGWIELKS WDHSIVQPRS ATASTAGGHT MTRCEHGDMI
FTKEIDSSSP LLYQHASGGT TFDEVTVHFS RADGEGKRVQ YLEVKLKYVI ISSIAPSVRE
EGLPLETFSL KYAAVQWKQT QQKIGGNQGG NTQGAWSLTK NDKTYAV
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