Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_6135 |
Symbol | |
ID | 4097168 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008062 |
Strand | - |
Start bp | 729010 |
End bp | 732480 |
Gene Length | 3471 bp |
Protein Length | 1156 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638019422 |
Product | transcription-repair coupling factor |
Protein accession | YP_625972 |
Protein GI | 107028877 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.352842 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCAGATA ACGCTTCCAT CCCGTCCGCT TCACCCGTTG CCCGCGTCAA GCCCGGCCAG CGTTTCGCCT TCGACGGCGC GCACGGCTCC GCCGACGCGC TCGCCATCGC CCGTTATCTC GCCGACAACC GCCAGGACGT GCCGCTCCTC GCGGTGATCT GCGCGAACGC GGTCGACGCG CAGCGGCTGT CGCAGGAAAT CCGCTACTTC TCGCCCGACG CGCGCGTGCG CCTGCTGCCC GACTGGGAAA CGCTGCCGTA CGACACGTTC TCGCCGCACC AGGACCTCGT GTCCGAGCGG CTGGCCACGC TGCACGACCT CGGCGAGGGC CGCTGCGACA TCCTGCTCGT GCCCGCCACC ACCGCGCTGT ACCGGATGCC GCCCGCGTCG TTCATGGCCG CGTACACGTT CGCGTTCGCG CAGGGCGAGC GGCTCGACGA GGCGAAGCTG AAAGCGCAGC TCACGCTGGC CGGCTACGAG CACGTGAGCC AGGTCGTGCG CCCCGGCGAA TACTGCGTGC GCGGCTCGCT GATCGACCTG TACCCGATGG GCTCGCCGCT GCCGTACCGG ATCGACCTGT TCGACGACCA GGTCGATTCG ATCCGCGCGT TCGATCCCGA CACGCAGCGC AGCCTCTACC CGGTGCGCGA CGTGCGCCTA CTGCCCGGCC GCGAGTTCCC GTTCGACGAA GCCGCGCGCA CGGCCTTCCG CAGCCGCTGG CGCGAAACCT TCGAAGGCGA CCCGAGCCGC GCGCCGATCT ACAAGGACAT CGGCAACGGC GTGCCGTCGG CCGGCATCGA GTATTACCTG CCGCTGTTCT TCGACGAGAC GGCCACGCTG TTCCACTACC TGCCGCAGGA CGCGCACCTC GTGTTCACCG GCGACCTCGA AGCGTCGATC CGCCGCTTCA CGGCCGATAC GAAGCAGCGT CACGCGTTCC TCGCGCACGA TCGCGAGCGA CCGATCCTCG AGCCGCAGCG GCTGTTCCTG TCCGACGAGG ATTTCTTCGC GTTCGCGAAG CCGTTCGCGC GCGTCGTGCT GCCCGCGCAG CCGGCCGGCG GCTGGGCGAC CGCCCTGCCC GAACTCACCG TCGACCGCCA TGCGGACGAT CCGCTCGCGT CGCTGCGCAC GTTCGTCGAA TCGTCGGGCA AGCGCGTGCT GCTGACGGTC GAATCGGCCG GCCGTCGGGA AACGATCCTG CAACTGCTCG CCGAACATCA CCTGCGGCCG TCGTCGAACG ACGATTTCGC GAGCTGGCTG GCGAGCGATG CGCGCTTCGC GCTCGGCGTC GCGCCGCTCG CGAACGGCTT CGCGGTGCCG GGCGAAGGCT ATGCGATCGT CACCGAAACC GAGCTGTACG GCGCGCTCGG CCGCCGCGCG GGCCGCCGCC GGCAGGAACA GGCGAGCAAC GTCGACGCGA TGGTGCGCGA CCTGTCCGAG CTGAAGGTCG GCGACCCGGT CGTCCACGCG CAGCACGGCA TCGGCCGCTA CATGGGCCTC GTGTCGATGG ATCTCGGCGA AGGCGAGACC GAATTCCTGC ATCTCGAATA CTCGGGCGAC AGCAAGCTCT ACGTGCCCGT CGCGCAACTG CACGTGATCT CGCGCTACAG CGGCGCCGAT CCCGACAGCG CGCCGCTGCA CGCGCTCGGC TCCGGCCAGT GGGAGCGCGC GAAGCGCAAG GCCGCGCAGC AGATCCGCGA CACGGCCGCC GAGCTGCTGA ACCTGTACGC GCGCCGCGCG GCCCGTGAAG GCCACGCGTT CTCGCTCGAC CCGCGCGACT ACGTGAAATT CGCGGAAAGC TTCGGCTTCG AGGAAACGCC CGACCAGGCC GCGGCGATCG CGGCCGTGAT CGGCGACATG ACGAGCGGCA AGCCGATGGA CCGCCTCGTG TGCGGCGACG TCGGCTTCGG CAAGACCGAG GTCGCGCTGC GCGCGGCGTT CATCGCGGTG CTGGGCGGCA AGCAGGTCGC GCTGCTGTCG CCGACCACGC TGCTCGCCGA GCAGCACACG CAGACCTTCG CGGACCGCTT CGCGGACTGG CCGGTGCGCA TCGTCGAGCT GTCGCGCTTC AAGACCGCGA AGGAAGTGAG CGCGGCGATC GCTCAGATCA ACGAAGGCAG CGTCGACATC GTGATCGGTA CGCACAAGCT ACTGTCGTCG GACGTGCAGT TCAAGCGTCT CGGCCTCGTG ATCATCGACG AGGAACACCG CTTCGGCGTG CGCCAGAAGG AAGCGCTGAA GGCGCTGCGC GCGGAAGTCG ACGTGCTGAC GCTCACCGCG ACGCCGATCC CGCGTACGCT CGGGATGGCG CTCGAAGGGC TGCGCGATTT CTCGGTGATC GCGACCGCGC CGCAGAAGCG GCTCGCGATC AAGACCTTCG TGCGCCGCGA GGAAGAAAGC GTGATCCGCG AGGCGATGCT GCGCGAACTG AAGCGCGGCG GCCAGGTGTA CTTCCTGCAC AACGAAGTCG AGACGATCGA GAACCGCAAG GCGATGCTCG AGGCGCTCGT GCCCGAGGCG CGCATCGTGA TCGCGCACGG CCAGATGCAC GAGCGCGAAC TCGAACGCGT GATGCGCGAT TTCGTCGCGC AACGCGCGAA CGTGCTGCTG TGCACGACCA TCATCGAGAC CGGCATCGAC GTGCCGAGCG CGAACACGAT CATCATGCAC CGCGCGGACA AGTTCGGCCT CGCGCAGCTG CACCAGTTGC GCGGCCGGGT CGGCCGCTCG CACCACCAGG CCTACGCGTA CCTGCTGGTG CACGATCCGC AGTCGCTGAC CAAGCAGGCG CAGCGCCGGC TGGAAGCGAT CCAGCAGATG GAGGAACTCG GCTCGGGCTT CTATCTCGCG ATGCACGACC TGGAGATCCG CGGCACCGGC GAAGTGCTCG GCGACAAGCA GTCGGGCGAA ATCCACGAGA TCGGCTTCCA GCTCTATACG GACATGCTGA ACGACGCGGT GAAGGCGCTG AAGAACGGCA AGGAGCCCGA CCTCACCGCC CCGCTCGCCG CGACGACCGA AATCAACCTG CATGCGCCCG CGATCCTGCC GGCCGATTAC TGCGCGGACG TGCAGGAGCG GCTGTCGCTG TACAAGCGGC TCGCGAACTG CGAGCACGGC GACGCGATCG ACGGCATCCA GGAAGAGCTG ATCGACCGTT TCGGCAAGCT GCCGCCGCAG GCGCACGCGC TCGTCGAGAC GCACCGGCTG CGGATCGCCG CGAAGCCGCT CGGCATCGTG AAGATCGACG CGAGCGAGGT CGCGATCGGG CTGCAGTTCG AGCCGAATCC GCCGATCGAC CCGATGCGGA TCATCGAGAT GGTGCAGAAG CATCGCCACA TCAAGCTCGC GGGCCAGGAC AAGCTGCGCA TCGAGACGCG CTCGCCCGAT CTCGCGATCC GCGTGTCGAC GATCAAGGAA ACGCTGCGCG CGCTCGGCCC GAAACAGGGG GCGGCCGTCG CGGCCCGCTG A
|
Protein sequence | MPDNASIPSA SPVARVKPGQ RFAFDGAHGS ADALAIARYL ADNRQDVPLL AVICANAVDA QRLSQEIRYF SPDARVRLLP DWETLPYDTF SPHQDLVSER LATLHDLGEG RCDILLVPAT TALYRMPPAS FMAAYTFAFA QGERLDEAKL KAQLTLAGYE HVSQVVRPGE YCVRGSLIDL YPMGSPLPYR IDLFDDQVDS IRAFDPDTQR SLYPVRDVRL LPGREFPFDE AARTAFRSRW RETFEGDPSR APIYKDIGNG VPSAGIEYYL PLFFDETATL FHYLPQDAHL VFTGDLEASI RRFTADTKQR HAFLAHDRER PILEPQRLFL SDEDFFAFAK PFARVVLPAQ PAGGWATALP ELTVDRHADD PLASLRTFVE SSGKRVLLTV ESAGRRETIL QLLAEHHLRP SSNDDFASWL ASDARFALGV APLANGFAVP GEGYAIVTET ELYGALGRRA GRRRQEQASN VDAMVRDLSE LKVGDPVVHA QHGIGRYMGL VSMDLGEGET EFLHLEYSGD SKLYVPVAQL HVISRYSGAD PDSAPLHALG SGQWERAKRK AAQQIRDTAA ELLNLYARRA AREGHAFSLD PRDYVKFAES FGFEETPDQA AAIAAVIGDM TSGKPMDRLV CGDVGFGKTE VALRAAFIAV LGGKQVALLS PTTLLAEQHT QTFADRFADW PVRIVELSRF KTAKEVSAAI AQINEGSVDI VIGTHKLLSS DVQFKRLGLV IIDEEHRFGV RQKEALKALR AEVDVLTLTA TPIPRTLGMA LEGLRDFSVI ATAPQKRLAI KTFVRREEES VIREAMLREL KRGGQVYFLH NEVETIENRK AMLEALVPEA RIVIAHGQMH ERELERVMRD FVAQRANVLL CTTIIETGID VPSANTIIMH RADKFGLAQL HQLRGRVGRS HHQAYAYLLV HDPQSLTKQA QRRLEAIQQM EELGSGFYLA MHDLEIRGTG EVLGDKQSGE IHEIGFQLYT DMLNDAVKAL KNGKEPDLTA PLAATTEINL HAPAILPADY CADVQERLSL YKRLANCEHG DAIDGIQEEL IDRFGKLPPQ AHALVETHRL RIAAKPLGIV KIDASEVAIG LQFEPNPPID PMRIIEMVQK HRHIKLAGQD KLRIETRSPD LAIRVSTIKE TLRALGPKQG AAVAAR
|
| |