| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_5136 |
|---|
| Symbol | |
|---|
| ID | 4095143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | - |
|---|
| Start bp | 2420039 |
|---|
| End bp | 2422276 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638018417 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_624983 |
|---|
| Protein GI | 107027472 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1944] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00702] uncharacterized domain
[TIGR03604] bacteriocin biosynthesis docking scaffold, SagD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00343987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGATG ACCTTTCGCG CGTATTGCGC TTCAAGCCGC ACCTGCTCGT GCTCGATGCC
GGGCCCGAGA CCCTGTTCGT CGTCGACGAA TTCAGGCGCG CGATGCTGTC CGGCGCGATC
TTCGTGCGGA TCGCCGCGTG CCTGCGGGCG CGCATGACGA TTGCCGAGAT CGTGACGTCG
CTGGCCGGCA CGTTCGGCGA ATGGGACGTG CTCGCGCGGC TCGATCATCT GGTGCGGCGC
GGCTACGTGC GCGCCGATCC ACCGCACGCC GACGATGCGG CGCGCGGCTT CTTCGAACGG
ACCGGGCTCG ACGGCGACGC CGCGTGCGCG CGCATGGCCC AACTGCGGGT CGCGGTGGAG
ACGTTCGGTG CGGCCGGTGC GGCGCTCCGG CGCGCGTTCG ACGCGGCTGG TATCGGCATC
GCGAAGGAGG CCGAACTGAC CGTCGCGATC GTCGATACGC ACGACCGCGA CGATCTCGCC
GCGTATGCCG CCCGCGTGGC GGCGCGCGGC GGTGCGCTGC TCGTCGTGGC GACCGGCGGC
GTGCAGACGC TGATCGGACC GTTGCTGGCC GGCGGCGCCG CGCTCGCCGA GGCGCCGTGC
ATCGAATGCG TGCGCTACTG GATGCGCGTC AACCGGCCGG TCGAGGCGCT GCTGGCGCGC
CATCACGGCA GCGACGCGAC GCGTGTACCG GTGGCCGCCT CGCGTGCGGC CGCCGCCGCC
GCGGCCGCGC TCGTGGCCGC GACGGTCGAG CAGCTCGCGG CCAACCGCGC GGTCGCGGAA
CGTGCGCAAA CGCACATCGT TGCGCATCGA CTCGACACGC TGGCCGTCGA ACGGCATCGC
GTGGTCAGGC GGCCGCAATG CCCGTGCTGC GGGAATCCCG CGTGGATGCG CGAGCAGGCG
GCGCGGGCGC CGCGACTCGC CGGGGATGCG CCGCTGGCGC GGACGGACGG CGGCTACCGG
AGCGCCGATC CGCAACAGGT GTTCGCGCGT CACGCGCATC TGATCTCGCC GGTCAGCGGC
GCGATCGCGT ATCTGCATCC GATGCCGAAG CGGCACGCGG GCCTGCGCAA GGTCTATGCG
TCGGGCTTTC TCGTATGCCC GGCCGCCGTG CCGGACAGCA ACCGGTTCGA CCGGCTCTGC
TCCGGCAAGG GCCGCACCGA CGAGCAGGCC CGTACCAGCG CGCTGTGCGA GGCGCTCGAA
CGTTTCAGCA GCGTGTATCA GGGCGACGAG GCGACGGTGA CCGGCAGCCT CGACAGCCTG
CGCGCCGATC CGGCCTGCGA CGCCGAGCCG ATCCATGTGA ACGCGCTTCA GCAGTTCAGC
GAACGGCAAT TCGACGCGCG CGACGCGATC AACGCGTTGA CTCGCGATGT GCGCAAGCAG
GTGCCGCCGC GCTTCACGTC GCACGACGTG ATCGACTGGA CGCCTGCGTG GTCGCTCGTG
AACGGCCGGC GTCGCCTCGT GCCGCTGAGC TACTGCTACG CGGAAACGCC CGACAGCGCG
CAGGCCACGG CCGCCTGCGT GCACAACCCG AACGGCTGCG CCGCCGGCTC GAGCCTCGAC
GAGGCGATTC TGCAAGGCAT GCTCGAGTTG ATCGAGCGCG ATGCGGTCGC GATCTGGTGG
TACAACCGGA TCGCGCGCCC CGGCATCGAT CTCGCGGGTT TCGACGATCC GTATTTCGAC
GCGCTCGTGC ACGAATACGC GACGTTCGGA TGGCGCGTAT GGGCGCTCGA CATCACGACC
GATCTCGCGG TGCCGACCGT GGTCGCGCTC GCGGAGAATC CGCAGGACGG GCGTTTCTCG
ATCGGTTTCG GCTGTCATCC CGATGGCCGG ATCGCGGTGC AGCGGGCGCT GACCGAAGTC
AACCAGTTGC TCGATATCGC GGCGGATGCG CCGCATCCAT GGGATCGCGA CACGCTTTCG
TCGACCGGAT TTCTGTATCC GGCGGCAGGT ATGCCGGCAA CGACGCCTTC GACGTGGCGG
CGGCCCGATG CCGCGTCGTT ACCGGCGGTG ATCGCGGAGT GTGTCGAGCG CATCGCGGCA
GCCGGCATGG ACGTGCTCGT CGTCGACAAG ACGCGGCCCG ACATTGGCTT GTCCGTGGTG
CAGGTGATCG CACCGGGGCT GTGCCATTTC TGGCCGCGTT TCGGCGCGCG GCGACTGTAT
TCGGTGCCGG TGGCGCTGGG TTGGCGCGCG CAGCCGTGCG ACGAAACGGC GTTGAATCCG
GCGCTGCTGT TTCTGTGA
|
|---|
| Protein sequence | MLDDLSRVLR FKPHLLVLDA GPETLFVVDE FRRAMLSGAI FVRIAACLRA RMTIAEIVTS
LAGTFGEWDV LARLDHLVRR GYVRADPPHA DDAARGFFER TGLDGDAACA RMAQLRVAVE
TFGAAGAALR RAFDAAGIGI AKEAELTVAI VDTHDRDDLA AYAARVAARG GALLVVATGG
VQTLIGPLLA GGAALAEAPC IECVRYWMRV NRPVEALLAR HHGSDATRVP VAASRAAAAA
AAALVAATVE QLAANRAVAE RAQTHIVAHR LDTLAVERHR VVRRPQCPCC GNPAWMREQA
ARAPRLAGDA PLARTDGGYR SADPQQVFAR HAHLISPVSG AIAYLHPMPK RHAGLRKVYA
SGFLVCPAAV PDSNRFDRLC SGKGRTDEQA RTSALCEALE RFSSVYQGDE ATVTGSLDSL
RADPACDAEP IHVNALQQFS ERQFDARDAI NALTRDVRKQ VPPRFTSHDV IDWTPAWSLV
NGRRRLVPLS YCYAETPDSA QATAACVHNP NGCAAGSSLD EAILQGMLEL IERDAVAIWW
YNRIARPGID LAGFDDPYFD ALVHEYATFG WRVWALDITT DLAVPTVVAL AENPQDGRFS
IGFGCHPDGR IAVQRALTEV NQLLDIAADA PHPWDRDTLS STGFLYPAAG MPATTPSTWR
RPDAASLPAV IAECVERIAA AGMDVLVVDK TRPDIGLSVV QVIAPGLCHF WPRFGARRLY
SVPVALGWRA QPCDETALNP ALLFL
|
|---|
| |