Gene Bcen_4210 details

Gene Information

• Locus tag: Bcen_4210
• ID: 4095911
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia AU 1054
• Kingdom: Bacteria
• Replicon accession: NC_008061
• Strand: +
• Start bp: 1412990
• End bp: 1415020
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 638017501
• Product: choline/carnitine/betaine transport
• Protein accession: YP_624069
• Protein GI: 107026558
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.157306
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCGCCA TGCCGGATTC CCGTCCCTCG CCCCGCACGA CATTCAAGCC GCAGGTCGTC 
CTGCCCGCGC TCGCCGTGAT CGGCGCGCTA CTCGTCGTGT GCGCACTGCA CCCGAGCGAA 
GCCGGCGCAC TGTTCTCCGC CGGCCAGCAA TGGGTTATCG CCCGGTTCGA CTGGTTCTAC 
GTGCTCGCCG TCACCGGCTT CCTCGTGTTT CTCGTGCTGA TCGCCGCCAG CGACTTCGGC 
AATATCCGGC TCGGCCCCGA CGATGCCGAA CCGGAATTCA GCTTCGTGTC GTGGACGGCG 
ATGCTGTTCG CGGCCGGCAT GGGCATCGGC CTGATGTACT TCGGCGTCGG CGAGCCGATG 
CAGCATTTCC TGAAGCCGCC CACCGTCGAC CCCGGCACGC CCGCCGCCGC GCGCGAGGCG 
ATGCTGATGA CCTTCTTCCA CTGGGGCTTC CATGCGTGGG CGATCTACGG GCTGATGGGG 
CTCGTGCTCG CGTACTTCGG CTTCCGCTAC AACCTGCCGC TGACGCTGCG CTCCGGGCTG 
TATCCGGTGC TGCGCGAGCG CATCAACGGC TGGATCGGCC ACACCGTCGA TGCGTTCGCG 
CTGGTCGGCA CGGTCGCCGG GATCGCAACG ACGCTCGGCT ACGGCGTGAT GCAGCTGAGC 
GCGGGCCTGC ATACGGTCGC CGGATGGGAC ACGGGCAGCA ACCTGTTCCG CATCGGGCTC 
GTCGCGGCGG TCGTGGTCCT CGCGGGCGTA TCGGCCGCGA CCGGCCTCGA CAAGGGCGTG 
CGCCGGCTGT CCGAACTGAA CCTGCTGCTC GCATTCCTGC TGCTCGCCTT CGTGGTGGTC 
GCGGGCCCGA CGGCCTTTCT GCTGCGCGCG CTCGGCGACA ACATCGGCCA GTACCTGTCG 
AGCCTCGTCG ACCTGTCGTT CCGCACCTAT GCGTACGCGC CGCCGCGCGA GGAAGGCTGG 
TTCGGCGGCT GGACGATCCT CTACTGGGCG TGGTGGGTGT CGTGGTCGCC GTTCGTCGGC 
ATGTTCATCG CGCGCATCTC GCGCGGCCGC ACGATCCGCC AGTTCGTGAT CGGCGTGCTG 
CTCGTGCCGA CCGCGTTCAA CCTCGTGTGG ATGACCGTGT TCGGCAACAG CGCGATCTGG 
CTCGATACGC ACGGCGCGGC CGGCGCGCTC GCGCAGACGG CGACCAACGT CGATGCGCTG 
CTGTTCCGCT TCTTCGATTT CCTGCCGTTG CCGCAACTGC TGTCGATCGT CGCGATCGTG 
CTGATCGCGG TGTTCTTCGT CACGTCCGCC GATTCGGGCG CGTTCGTGAT CGACCAGATC 
GCGACGCGCG GCAATGCGCA TTCGCCGGTC TGGCAGCGGC TGTTCTGGGC CGCGCTGCTC 
GGCGTGACGG CCGCGGTGCT GCTCGTCGCG GGCGGGCTCG GCGCGCTGCA GGCGATGACG 
CTGATCGCCG CGCTGCCGGT CGCCATCATC ATGCTCGCGC TGTGCTACGG GCTGTGGCGC 
GGGCTCGCGG CCGACCGCGC GCACTACTCG CAGGACGTTG CGCCTGCAAC GAGCTTCTGG 
ACCGGCCAGC ACTGGCGCCA TCGCCTGACG CACATCCTGC GGCAGACGAC CGAGGCCGAG 
GCGCGCCAGT TCGTCGCGGA AACGGTCGAA CCCGCGCTGC GCAAGGTCGC CGACGAGCTG 
CGCGCGAGCG GCGTCGATGC GCACGTGCAG CGCGACAGCG ACGATGCAGT GCGGCTCACC 
GTACCGACCG CCGAACACCG CGATTTCGTG TACGGCGTGC GCGTCACCGC GAAATCCGCG 
GCCGCGTTCC TGGTGCGCGA GGCGGCCGAG CCGGACGAGA CGCGTGCGCA TGTCCATGGC 
ATCGTCACGT TCTTCGAGGA CGGCCGGCTC GGCTACGACA TCGAATACCT GCGCGGCGAC 
GAAGTGATCG CCGACGTGCT GCGCCAATAT GAACGCTACG TGTCGCTCGC GGCAGACACC 
CGCACGCATC TGCTGAGCCG GGCACCGGGG CACGCGACGG AGGCCGAATG A 

 

Protein sequence

MPAMPDSRPS PRTTFKPQVV LPALAVIGAL LVVCALHPSE AGALFSAGQQ WVIARFDWFY 
VLAVTGFLVF LVLIAASDFG NIRLGPDDAE PEFSFVSWTA MLFAAGMGIG LMYFGVGEPM 
QHFLKPPTVD PGTPAAAREA MLMTFFHWGF HAWAIYGLMG LVLAYFGFRY NLPLTLRSGL 
YPVLRERING WIGHTVDAFA LVGTVAGIAT TLGYGVMQLS AGLHTVAGWD TGSNLFRIGL 
VAAVVVLAGV SAATGLDKGV RRLSELNLLL AFLLLAFVVV AGPTAFLLRA LGDNIGQYLS 
SLVDLSFRTY AYAPPREEGW FGGWTILYWA WWVSWSPFVG MFIARISRGR TIRQFVIGVL 
LVPTAFNLVW MTVFGNSAIW LDTHGAAGAL AQTATNVDAL LFRFFDFLPL PQLLSIVAIV 
LIAVFFVTSA DSGAFVIDQI ATRGNAHSPV WQRLFWAALL GVTAAVLLVA GGLGALQAMT 
LIAALPVAII MLALCYGLWR GLAADRAHYS QDVAPATSFW TGQHWRHRLT HILRQTTEAE 
ARQFVAETVE PALRKVADEL RASGVDAHVQ RDSDDAVRLT VPTAEHRDFV YGVRVTAKSA 
AAFLVREAAE PDETRAHVHG IVTFFEDGRL GYDIEYLRGD EVIADVLRQY ERYVSLAADT 
RTHLLSRAPG HATEAE