| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_3878 |
|---|
| Symbol | |
|---|
| ID | 4095735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | + |
|---|
| Start bp | 1038878 |
|---|
| End bp | 1040008 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638017172 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_623740 |
|---|
| Protein GI | 107026229 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCGG GCGATTCACG CGGGGTGCGA TTGATCAGGG GAATCGGTGC ACGCGCGCGC
GCCCGCGGCG CCGTGCGCAC GCTGCTTGTC ATGCTGACGC TTGGCTTACT GGCGCCCGTT
CCGCCGGCCG TCGCGGCCTC TCCCGAAACC GTCAACGACA ACGTGCTGCG CGTGCTGGCC
TGGCCCGGTT ATGCGGACAG CGATATCGTC AGCGCATTCG AGGCGCAGTT TCATGTGCGT
GTCGAGGTGA CGCTGGTCGA TTCCGACGAA GCGCTGTGGA CGCGGTTGCA CAGCGCGTCG
CCGCCGCCGT ACGACGTGCT GGCCGCGAAC ACGGCCGAGA TCCAGCGCTA TGCGCATGAA
CACCTGCTTG CGCCGATCGA CCTGTCGCGC ATCGCGAACC GGCGGCGGCA GTTGCCGAAT
TTCCAGCAGC TCGCGACGAT CGGCGGCCTC GTGCAGGACG GCGCGTCCTA CGCGATCCCG
TTCACGTATT CGTCGATGGG GCTGATCTAC GATCGCAAGC AGGTGCCGGC CGCGCCGCGC
TCGATGCGCG AGCTGTGGAA TCCTCGCTAT CGCGGCAAGG TGCTCGACTT CAACAGCGCG
CAGCACAACT TCTCGTTCAC GGCGCTGGCG CTCGGCTATT CCGATCCGTT CCGCCTGTCG
CCCGCGCAGA CGCTTGCCGT GGCCCGCAAG CTGATCGACC TGCGCCGCAA CCTGCTGACG
TACTACACGC TTCCCGAAGA AGCGACCGCG CTGTTCGTCC AGCATCGCGC GGCGCTGATG
TTCGGCAACT ACGGCACGCA GCAGGTGGAG CAGTTGCGTC GCGCCGGCGC GGACGTCGGG
TACGTGATCC CGGACGAAGG CGCGCTCGCG TGGCTCGACT GCTGGGCCGT CACGCGCGGC
GCGCAACGTC CCGAGCTTGC CTTCGCGTGG ATCAACTACA TGCTCGAACC GGCGATCGGC
GCGCTGCTGA CCGAGCGTCA GGGGCTCGCG AACACGCTCG AGCCGCCGCG CGGCCTGGAT
ACCGGACACC AGCATCTCGT GTGGCTTCAG CCCGTGGAGG ACATCGCGCG CCGCGAATCG
CTGTGGAGCC GCATCGTGTC GGGCGACCGG CCGGAGCGAT TCGGAAAATG A
|
|---|
| Protein sequence | MQPGDSRGVR LIRGIGARAR ARGAVRTLLV MLTLGLLAPV PPAVAASPET VNDNVLRVLA
WPGYADSDIV SAFEAQFHVR VEVTLVDSDE ALWTRLHSAS PPPYDVLAAN TAEIQRYAHE
HLLAPIDLSR IANRRRQLPN FQQLATIGGL VQDGASYAIP FTYSSMGLIY DRKQVPAAPR
SMRELWNPRY RGKVLDFNSA QHNFSFTALA LGYSDPFRLS PAQTLAVARK LIDLRRNLLT
YYTLPEEATA LFVQHRAALM FGNYGTQQVE QLRRAGADVG YVIPDEGALA WLDCWAVTRG
AQRPELAFAW INYMLEPAIG ALLTERQGLA NTLEPPRGLD TGHQHLVWLQ PVEDIARRES
LWSRIVSGDR PERFGK
|
|---|
| |