| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_3702 |
|---|
| Symbol | |
|---|
| ID | 4095010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008061 |
|---|
| Strand | - |
|---|
| Start bp | 829521 |
|---|
| End bp | 831050 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638016999 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_623567 |
|---|
| Protein GI | 107026056 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATA TCTCGATGAC CACCGACACC CTCCTCACTC CGCCGGCCGC CGACGCGGCC
CGCCGCGACG CGCCGACCGG GCTGATCGTC GCCGCGCTGC TGCTCGTCAT GCTGCTGTCC
GCGCTCGACC AGACGATCGT GTCGACCGCG CTGCCGACGA TCGTCGGCGA ACTCGGCGGG
CTCGACCAGT TGTCGTGGGT CGTCACCGCG TACCTGCTGT CGTCCACCGT CGTACTGCCG
CTGTACGGCA AGCTCGGCGA CCTGTACGGC CGCAAGATCG TGCTGCAGGC GGCGATCGTG
CTGTTCCTCG CCGGCTCCGC GCTGTGCGGC GTCGCGCAGG ACATGACGCA ACTGATCGTG
CTGCGCGCGC TGCAGGGGCT CGGCGGCGGC GGCCTGATGG TCGTCACGAT GGCCGCGATC
GGCGATCTGG TGCCGCCCGA TCGCCGGGCG CGCTACCAGG GGATGTTCGG CGGCGTCTAT
GGCCTCGCGA CGATCGTCGG GCCGCTGCTC GGCGGCTTCC TGGTCGAACA CCTGTCGTGG
CGCTGGATCT TCACGATCAA CCTGCCGCTC GGCGTGCTCG CGCTCGCGGT GATCGGCATG
GCGTTCCGGC CGCACACCGC GCACGTGAAG CACCGGATCG ACTACATGGG CGCCGCGTTC
CTCGCGACCG CCCTCACCTG CGTGATCCTG TTCACGAGCG AAGGCGGCTC GCTGCTGCCG
TGGACGTCGC CGCAGCTTTG GATGACGCTC GCGCTCGGCC TCGTCGCGAT CGGCGGCTTC
ATTTACGAAG AACGCCTCGC GGCCGAACCG ATCATGCCGC TCGAGCTGTT CCGCCACCGC
ACCTTCGTGC TGGTCAGCCT GATCGGTTTC GTGGTCGGCA TCGCGCTGTT CGGCTCGGTC
ACGTTCATCC CGCTCTACCT GCAGGTCGTG AAGGGCTCGA CGCCGTCGCA GGCCGGCATG
CAGCTGCTGC CGATGATGGG CGGGATGCTC GTCACGTCGA TCGTCAGCGG GCGGCTGATC
TCGCGGCTGG GCTCATACCG AATGTTCCCG ATCGCGGGGA CGCTGACCGG CGGCGTCGCG
ATGGCGCTGC TGTCGACGCT GACGCTCGAC ACGCCGCTGC ACACGATGTA CGCGTACATG
GCGCTGCTCG GGATCGGCCT CGGCATGGTG ATGCCCGTGC TGACGCTCGC CGTGCAGAAC
ACGGTCGAAT TCCGGCACAT GGGGGTGGCG ACGTCGGGCG CGACGCTGTT CCGCTCGATC
GGCGGCTCGC TCGGCGTCGC CGCGTTCGGC GCGCTGTTCT CGCACGGGCT GCAATCGCGG
ATGACGCATG CGCTGCCGGC CGGCACGGAA TTGCCGCCCG CGCTCGGCCC GGCCGCCGTG
CATCAGTCGC CGGATGCCGT GCGCGACGCG TACCTGCATG CGTTCGCCGG GTCGCTGCAC
GTCGTGTATC TGTCGGCCGC GACGGTCATC GCGATCGCGT TCGTGCTCGC GTGGTTCGTC
GAGGATGCGC CACTGCGCAA GCACCACTGA
|
|---|
| Protein sequence | MADISMTTDT LLTPPAADAA RRDAPTGLIV AALLLVMLLS ALDQTIVSTA LPTIVGELGG
LDQLSWVVTA YLLSSTVVLP LYGKLGDLYG RKIVLQAAIV LFLAGSALCG VAQDMTQLIV
LRALQGLGGG GLMVVTMAAI GDLVPPDRRA RYQGMFGGVY GLATIVGPLL GGFLVEHLSW
RWIFTINLPL GVLALAVIGM AFRPHTAHVK HRIDYMGAAF LATALTCVIL FTSEGGSLLP
WTSPQLWMTL ALGLVAIGGF IYEERLAAEP IMPLELFRHR TFVLVSLIGF VVGIALFGSV
TFIPLYLQVV KGSTPSQAGM QLLPMMGGML VTSIVSGRLI SRLGSYRMFP IAGTLTGGVA
MALLSTLTLD TPLHTMYAYM ALLGIGLGMV MPVLTLAVQN TVEFRHMGVA TSGATLFRSI
GGSLGVAAFG ALFSHGLQSR MTHALPAGTE LPPALGPAAV HQSPDAVRDA YLHAFAGSLH
VVYLSAATVI AIAFVLAWFV EDAPLRKHH
|
|---|
| |