Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_3276 |
Symbol | |
ID | 4096087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008061 |
Strand | + |
Start bp | 355268 |
End bp | 357118 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 638016575 |
Product | RND efflux system, outer membrane lipoprotein, NodT |
Protein accession | YP_623144 |
Protein GI | 107025633 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.108062 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTCAAG CGGCGGGTTC GGCGCGTGGC GTGAAGGGCG GCTCGATGAT CGCGGCCGCC GCGGCATTGC TCGCGTTGGC CGGATGCGTG CCGTCGGGCT TCCTGCCGTC GCTGTCGCTG CGTGCGCCGG CCGACGATGC GCTCGCGCAT ACCGCCGGCC CCGGCGCGAA CGGCGCATGG CCGGCGCCCG ACTGGGTGAA GCAGTTGCAG GACCCGCAGC TCGACGACCT GGTCGCCGAG GCGTCGCAGC ACAACCCGGA TCTACAGGTC GCGCAGGCGC GGTTGCGGAT CGCGCAGGCG CAGCTTCAGC AGTTCGATTC GCTGACCGGT TTGACCGGCA CGGCCGGCGC GACGATCAGC CGGGCACGGA TGCCGAAACC CGGCGACATT GCCGACGTGA CGGCCGGCGG CTATCGCGTG CCGGTGCAGA TCTTCGGCGA TCCGAACGTA TCGCCGTCGT CGGTCTTCGT CGGGCTGAAC TACCAGCTCG ACCTGTGGGG CAAGAACCGC GCGGCGACGA AGAGCCTGAT GTCGCTGCGC GACGCGGCCG GCGTCGAAGC CGAACAGGTG CGGCTCACGC TCGCCGTCGC GATCGTCACC GTGTATTGCC AGCTCGACCA GGCGTACGCG GTGCGCGACC TGTTGCAGCA GAAGCTGAAG ATCAGCCAGC GCGTGACGGC CGTGCTGCGC GAGCGCACCG CGCGCGGCCT CGACAACGCG TACGACGCGA GCGATGCGTC GATCAAGCGC AGCCGTCTGC TCGAGCAGAT CGCGCTGAAC GACGAGCAGA TCAAGCTCGC GCAACTGCAA CTCGGCGTGC TGTCGGGCCG CGGCCCGGAG CGCGGGCTCG CGCTGCAGCG GCCGCGCGTC GGCGCGTTCG CGGGCGGCGC CGTGCCCGCC CGGCTGCCGG CCGATCTGCT CGGCCGCCGG CCCGACATCG TCGCCGCGCG GTTGCGCGTC GAAGCCGCGT TCGCGAATGC CGACTCGACG CGTGCGCAGT TCTATCCGGA CGTGAATCTC GTCGCGCTCG GCGGCGTGTT CGCACTGACG CCCGCGTCGC TGTTCTCGCG CGATTCGCTC GCGGGCTCCG TGGGCCCCGC GATCTCGCTG CCGATCTTCG ATCGCGGCCG CTTGAAGGCG AAGCTCGGCG CGGACGTCGC GCAGGCCGAC GTCGCGATCG GGCTGTACAA CAAGACCGTC GACGACGCGC TCGGGCAGGT CGCGCAACTC GTCACGTCGC TGCAGACGTC GCAGACGCTC GTCGCGCAGC AGCAGGACGC GGTCGCGGCC GCGCAGAAGA TCGTGCAGAT CGCGGCGGAT CGGCATCGGC GCGGCGTGCT GATGCAGAAG GACGTCGATG TCGCGGATCT CACGCTGATC GACGAGCGCG CGCAGATGAT CGCGCTGCTC GGCAAGCAGC GGACGCTGCG GGTGGGGCTG ATCGGCGCGC TGGGCGGCGG GTTCGATGCG GGCGCAACGG TCGCGCAAGC GCAGACGCCG GCCGGGCCGC GGGCGCGGAG TGGGGCGGCG AAGCGCGGGG CGGCAACGGC CGTGGCTGCT GTGGGCGCCG TGGCCGCGAA TCGGGAGACG GCTGGCCAGT CTAACGATGC ACGCGCAGGC AGCACGGCAG TGTCGCCGGC TGCTACCGCG ACGAGCAACG CGTCTGCATC GGCACGACGC GACGACACGA CACGCCCGTC GACGATCGGT GCGACCCGCC CCGACGCGGC GCCGCGCGGC AACCCCGTTC TCGCGCGCAC GGCCTCGGCG AGCCCGACGC GCGATTCGTC GCCGATGCCT GCGATTCCCG TCTTCCAGCA CGATCGTCTG ATCGTTACGC AAAGCGACTG A
|
Protein sequence | MIQAAGSARG VKGGSMIAAA AALLALAGCV PSGFLPSLSL RAPADDALAH TAGPGANGAW PAPDWVKQLQ DPQLDDLVAE ASQHNPDLQV AQARLRIAQA QLQQFDSLTG LTGTAGATIS RARMPKPGDI ADVTAGGYRV PVQIFGDPNV SPSSVFVGLN YQLDLWGKNR AATKSLMSLR DAAGVEAEQV RLTLAVAIVT VYCQLDQAYA VRDLLQQKLK ISQRVTAVLR ERTARGLDNA YDASDASIKR SRLLEQIALN DEQIKLAQLQ LGVLSGRGPE RGLALQRPRV GAFAGGAVPA RLPADLLGRR PDIVAARLRV EAAFANADST RAQFYPDVNL VALGGVFALT PASLFSRDSL AGSVGPAISL PIFDRGRLKA KLGADVAQAD VAIGLYNKTV DDALGQVAQL VTSLQTSQTL VAQQQDAVAA AQKIVQIAAD RHRRGVLMQK DVDVADLTLI DERAQMIALL GKQRTLRVGL IGALGGGFDA GATVAQAQTP AGPRARSGAA KRGAATAVAA VGAVAANRET AGQSNDARAG STAVSPAATA TSNASASARR DDTTRPSTIG ATRPDAAPRG NPVLARTASA SPTRDSSPMP AIPVFQHDRL IVTQSD
|
| |