Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_2620 |
Symbol | |
ID | 4093140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008060 |
Strand | + |
Start bp | 2880426 |
End bp | 2884370 |
Gene Length | 3945 bp |
Protein Length | 1314 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638015905 |
Product | ImcF-related |
Protein accession | YP_622491 |
Protein GI | 107024164 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGCA TCCTCAACGT GCTGACTCAT CCGCGTACGC TCTCGATCGT CGGGATCGTC GCGCTAGCGG CCATTCTGTT CATCGTCGCC GACATGCTGC AGCTGCCGCT CCTGTGGGCG GCGCTCGCGT TCGCGGCGGT CCTCGCGCTG TGGCTCGTCG TCGCGCTATG GCGCCGCTGG CGCGTGAAGC GCGCGAACCA GCAGCTCGGC CAGGTGCTGG AAGAGCAGGC GGAAACCGGC AAGATCGCCG CACCGGCCGC CGCCGCGCTC GCGCCGGACG CGAAGACGGC CGACCTCGAC GTGCTGCGCA CGCGCCTGTC GGATGCGGTG AAGACGATCA AGACGTCGAA GATCGGCCAG GTGTCGGGCG GCTCCGCGCT GTACGAACTG CCGTGGTACA TCGTGATCGG CAACCCAGCC GCGGGCAAGA GCAGCGCCGT GCTCAATTCC GGCCTGCAGT TCCCATTCGC GGACAAGAAC AGCGCCGTGA TCCACGGCAT CGGCGGCACG CGTAACTGCG ACTGGTTCTT CACGACCGAA GGGATCCTGC TCGATACGGC CGGCCGCTAT TCGGTGCACG AGGAAGACCG TAGCGAGTGG CTCGGCTTCC TCGGGCTGCT CAAGCGCTAC CGTCCGAAGG CGCCGATCAA CGGCATCATC GTCACGGCCA GCATCGCCGA ACTCACCGGC AATCGCCCCG AATTCGCGAT CAACCTCGCG AAGAACCTCC GTCAGCGCGT TCAGGAGCTG ACCGAAAAGC TGGAAGTGTT CGCGCCGGTC TACGTGATGT TCACGAAGGC CGACCTGATC ACCGGCTTCA CCGAATTCTT CAGCAGCAGC GACAAGCACG AGTACGACCG CGTGTGGGGC GCCACCCTGC CCTACGAACC CGACGACAAG CGTGACGTCG TCGCGCAGTT CGACACGCAC TTCGAGGAAC TCTACGAAGG GCTGAAGGAA ATCAGCGTCG CGCAGCTGTC GCTGTCGCGC GGCAACCAGC TGTCGCCGGG CCAGTTGAGC TTTCCGCTCG AATTCTCGAC GATCAAGCCG TCGCTGCGCG CGTTCCTCGC GACGCTGTTC GAGAACAACC CGTTCCAGTA CAAGCCGATC TTCCGCGGCT TCTACTTCAC CAGCGCACTG CAGGAAGGCG AAACCAACAG CGCGGCCGCG CAGCGCATCG CGCACCGCTT CGGCCTCGAC GGCAGCGCGC TGCCGAAACC GCACAGCGCG TTCTCGAAGA ACGGCTTCTT CCTGCGCGAC CTGTTCTCGA AGGTGATCTT CGCGGACCGC CAGACGGTGC GCCAGTTCGC GAGCCCGACC AAGACGCGGC TGCGCTACGC GACCTTCTTC GGCTTCGTCG CGGCGCTCGC GCTCGCGCTG GGCGGCTGGA CCTGGTCGAC CATCGGCAAC CAGCAGCTCG TCGCGAACGT GCAGGCCGAC CTCGACAACG TCACGCGCCT GCAGCAGGGC CGCAACGACC TGCAGTCGCG CCTGCAGGCG ATGGACATCA TCGAGGACCG GATCGAGCAG CTCGAACAGT TCCGCCGCGA CAAGCCGCTG TCGGTGTCGC TCGGCCTGTA CCAGGGCGAC CGTCTCGAGC AGCACCTGCT GACCGAGTAC TACAACGGCG TGCGCCAGAT CCTGCTGGCC CCGGTGTCGC AGAACCTCGC GTCGTTCATG AAGGACGTGA ACGCGCACCC CGAGCAGCTC GTGCCGATGA CGCGCCCGCC TGAATCGGGC GCCGTGCAGG GCGGCACGCT GCCGGTCTCG ACGAACGCGG CAGGAGCCGC GCCGCAAGCG GGCGCCATGC TGGCCGCGTC CGGCACCGCG CCGGCCGCCG CCCCGCAACA GGCGGCCGCG CCGCAGGGCG GCCTCTACAG CGACGCGTCG CCGACCAACG TGCAGGACGC GTACAACGCG CTGAAGACCT ACCTGATGCT GTCCGACAAG CGTCACGTCG AACAGGCGCA CCTGACCGAC CAGCTCGCCC GCTTCTGGCG CGGCTGGCTC GAGACGAATC GCGGCAACAT GCCGCGCGAC GAGATGATCC GGAGCGCCGA GCGCATGATC TCGTTCTACC TGTCGCGCGT GAACGACGAC GACTGGCCGA TGATCGACGC GAACCTCGCG CTCGTCGACC AGACCCGCGA GAACCTGCGC CGCGTCGTGC GCGGCATGCC GGCCCGCCAG CGCGTCTACG AGGAAATCAA GGCCCGCGCG TCGACCCGCT TCGCGCCGAT GACCATCGCG CGCATCGTCG GCGACGGCAA CCAGGGGCTC GTGGCAGGCA GCTATGCGAT TCCGGGCACG TTCACGCGCG AAGCGTGGTT CGACTACGTG CAGCCGGCGA TCCGCGATGC GGCGACCAAG GAGCTGCAGG CGAAGGACTG GGTGCTCAAC ACGTCGACGC AGGACGACCT GACGCTCGAG GGCAGCCCCG AGCAGATCCA GAAGACGCTC GTCGGCATGT ACAAGACCGA GTACGCGCAG CACTGGCAGA AGTTCATGCA GGGCATCGCG GTACAGGGCT TCACCAGCTT CGGCCAGGCC GTCGACGGGA TGAACCGCCT CGGCGACCCG CAGGATTCGC CGATCCGCAA GATCCTCGAG ACCGCGTACG ACCAGACGTC GTGGGACAAC CCGTCGCTCG CGAACGTGAC GATCAAGAAG GCGCAGACGG GCGTCGTGAA CTGGGTCAAG CAACTGTTCA CGCGCTCGCA GGCCGGCCAG ATGGCGGCAG CCAACATCGA CATCAACGGC AATCCGGCCG AGGTGCCGAT GGGTCCGATC GGCCAGGAAT TCGTCGGACT CGCGCGGATC GTCGCGACGC ATGACGGCAC GTCGATGCTC AAGGGCTACA TGGAGTCGCT GTCGAAGGTC CGCACCCGCT TCAACGTGAT CAAGAACCAG GGCGACCCGG GGCCGGGCGC GCGCCAGCTG ATGCAGCAGA CGCTCGACGG CAACGGTTCG GAACTCGCCG ATTCGCTGAA GCTCGTCGAC GAGCAGATGT TGACGGGCCT GACCGATTCG CAACGCAAGT CGCTGCGCCC GCTGCTGGTG CGGCCGCTGA TGCAGGCGTT CGCGGTCGTG ATCCAGCCGG CCAGCGCCGA AGTCAACAAG GTGTGGAACG CGCAGGTCTA CCAGCCGTTC CAGAGCTCGC TCGCGACCAA GTACCCGTTC GCGGCGAACG CGAAGGTCGA GGCCGGCGCC GGCGAGATCG CGCAGGTGTT CGGTCCGGAC GGCTCGATCG CGAAGTTCGT CGGCACGACG CTCGGGCCGC TCGCGGTGCG CCGCGGCGAC ACGCTCGCCG CCCGCACGTG GGGCGACATG GGCATCGGGC TCACGCCGGA CTTCACGAAC GGCTTCGCAC GCTGGGTCGC GCCGCTCGCG GGCGGCGCCG CCGGCAGCGC GGCCGCGTCG GCCGAACCGC AGACCGTGTT CCAGATCCTG CCGCAACCGA GCACGGGCAC GACGGAATAC ACGATCGCGA TCGACGGCCA GCAGCTGCGC TACCGCAACA CGCCGCCGCA GTGGACCAAC TTCGTGTGGC CAAACCCGCA GGGCGCGCCG GGCGCGACGC TGTCCGCGAC GACCTTCGAC GGCCGCACGG TGCAGCTCGT CAACGAGCCG GGCCGCTACG GTCTCGAGAA GCTGATCAAC TCGGCGCAGC GCAAGCGCCG TCCGGACGGC ACCTTCGATC TGACGTGGGC ACAAGGCAGC GTGAACGTGT CGGTGACGAT GCGCATCATC AGCACGTCGC AACCGTCGGC CGGTGGCGGC GACCAGCCGC AGCAGCAGAG CCTGCGCGGC CTGCAGCTGC CGTCGTCGGT CGCCGACGCG AGCGCGGGCG CCGCGCAGAA CGCGACGCAA GCCGGCACCG GCACGCCGGG CGCCGCGCCG GCCGTCGCGG CCGCCAACGC AACGAATGCA CAGAGGGCGC AATGA
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Protein sequence | MQRILNVLTH PRTLSIVGIV ALAAILFIVA DMLQLPLLWA ALAFAAVLAL WLVVALWRRW RVKRANQQLG QVLEEQAETG KIAAPAAAAL APDAKTADLD VLRTRLSDAV KTIKTSKIGQ VSGGSALYEL PWYIVIGNPA AGKSSAVLNS GLQFPFADKN SAVIHGIGGT RNCDWFFTTE GILLDTAGRY SVHEEDRSEW LGFLGLLKRY RPKAPINGII VTASIAELTG NRPEFAINLA KNLRQRVQEL TEKLEVFAPV YVMFTKADLI TGFTEFFSSS DKHEYDRVWG ATLPYEPDDK RDVVAQFDTH FEELYEGLKE ISVAQLSLSR GNQLSPGQLS FPLEFSTIKP SLRAFLATLF ENNPFQYKPI FRGFYFTSAL QEGETNSAAA QRIAHRFGLD GSALPKPHSA FSKNGFFLRD LFSKVIFADR QTVRQFASPT KTRLRYATFF GFVAALALAL GGWTWSTIGN QQLVANVQAD LDNVTRLQQG RNDLQSRLQA MDIIEDRIEQ LEQFRRDKPL SVSLGLYQGD RLEQHLLTEY YNGVRQILLA PVSQNLASFM KDVNAHPEQL VPMTRPPESG AVQGGTLPVS TNAAGAAPQA GAMLAASGTA PAAAPQQAAA PQGGLYSDAS PTNVQDAYNA LKTYLMLSDK RHVEQAHLTD QLARFWRGWL ETNRGNMPRD EMIRSAERMI SFYLSRVNDD DWPMIDANLA LVDQTRENLR RVVRGMPARQ RVYEEIKARA STRFAPMTIA RIVGDGNQGL VAGSYAIPGT FTREAWFDYV QPAIRDAATK ELQAKDWVLN TSTQDDLTLE GSPEQIQKTL VGMYKTEYAQ HWQKFMQGIA VQGFTSFGQA VDGMNRLGDP QDSPIRKILE TAYDQTSWDN PSLANVTIKK AQTGVVNWVK QLFTRSQAGQ MAAANIDING NPAEVPMGPI GQEFVGLARI VATHDGTSML KGYMESLSKV RTRFNVIKNQ GDPGPGARQL MQQTLDGNGS ELADSLKLVD EQMLTGLTDS QRKSLRPLLV RPLMQAFAVV IQPASAEVNK VWNAQVYQPF QSSLATKYPF AANAKVEAGA GEIAQVFGPD GSIAKFVGTT LGPLAVRRGD TLAARTWGDM GIGLTPDFTN GFARWVAPLA GGAAGSAAAS AEPQTVFQIL PQPSTGTTEY TIAIDGQQLR YRNTPPQWTN FVWPNPQGAP GATLSATTFD GRTVQLVNEP GRYGLEKLIN SAQRKRRPDG TFDLTWAQGS VNVSVTMRII STSQPSAGGG DQPQQQSLRG LQLPSSVADA SAGAAQNATQ AGTGTPGAAP AVAAANATNA QRAQ
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