Gene Bcen_1352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen_1352 
Symbol 
ID4091946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia AU 1054 
KingdomBacteria 
Replicon accessionNC_008060 
Strand
Start bp1492813 
End bp1494246 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content69% 
IMG OID638014627 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_621231 
Protein GI107022904 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.632235 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGTCT CGCTTGCGCT GCAGATGCGA CAGCATCTCG CACTTACGCC GAGGCTTCAG 
CAGTCGCTGC GGCTGCTGCA GTTGTCCTCG CTGGAGTTTC AACAGGAATT GCGTCAGGCG
CTCGACATGA ACCCGTTTCT CGAAGACGGC CAGGGCGACG AGGACACCGT TGCCGGCACG
CCCGAGCAGC CGACCGAAGC GGCCGCGCCC GAAGCGGCGC CCGAGCACGA CGACATTCGC
CCGCCGGATG GCGAGGTGCC GTTTACCGCG GCGCCCGCGC CGCGCGGCAC GAGCCGTCAG
GGCGACGATA CCGACGGCCT GTCGCCCGGC GAATGGATCG CCGCCGAGCC GTCGCTGCAT
CAGCAACTGC ACGATGCGCT GCGGCTCTAT CCGCTCAACA AGCGCGACCG CGAAGCCGCG
CGCCTCGTGA TCGATGCGCT GGACGACGAC GGCTACCTGC GTCAGGAACT GCCTGAACTG
CTGGTCGCCG CCGATCCCGC GTGGCTGCTG TCGGAGCAGG ATCTCGCGGT CGCGCTGCGG
CTCGTGCAGA TGCTCGACCG GCCGGGTATC GCGGCCCGTT CGTTGTCCGA ATGCCTGGTG
TTGCAGCTCG ACGCGATTCC GGCCGGCACG CCGGCGCTCG CGGAAGCGAA GGCGATCGCG
CGCGAGCATC TGGAGCGGCT CGCGCGCCGC GAGACGGCCG AGATCCAGCG ACGCCTCGGC
TGCAACCAGC AGACGCTGCA CGCGGCCTGC GCGCTGGTGC GCGGGCTCGA CCCGCGCCCG
GGCAATCACT ACGGCAGCAC GCGCGGCGAC TACGTGGTGC CCGACGTGAT CGTGCGTCAG
GTGCGCGACG AATGGATCGT CACGATCAAT CCGGCCGTGC TGCCGCGCGC CCGCCTGCAC
GAGCGCTATG CGACGCTGTT CGCGCAGTCG AGCGGCGAGC GCGATTCGCC GCTCGGCCAG
CAGTTGCAGG AAGCGCGCTG GCTGATCCGC AACGTGCAGA AGCGTTTCGA CACGATTCAG
CGCGTGGGCG AATGCATCGT CGCGCGGCAG CGCGATTTCT TCCGCTACGG CGAGATCGCG
ATGAAGCCGT TGGTGCTGCG CGACATCGCG GAAGAGCTCG ACCTGCACGA ATCGACCGTC
TCGCGCGCGA CCGGCAACAA GTACATGGCC ACGCCGCACG GCACGTTCGA GTTCAAGCAT
TTCTTCCCGC GCAAGCTGGA AGCAGCCGGC AAGGGCGTGT GTTCGGCGTC GGCCGCGAAG
GTGCTGATCC GCGACATGAT CGCGGCCGAG CGGCAGACCG ATCCGCTGTC CGACGTCGCG
CTCGCGGAGA ACCTCGCGGG CCGCGGCATC CTTCTTGCGC GCCGCACGGT GACCAAGTAT
CGCCAGGCGA TGAAGATTCC GCCGGCCGAC TTGCGGCGCC GCGACGCCGC GTGA
 
Protein sequence
MPVSLALQMR QHLALTPRLQ QSLRLLQLSS LEFQQELRQA LDMNPFLEDG QGDEDTVAGT 
PEQPTEAAAP EAAPEHDDIR PPDGEVPFTA APAPRGTSRQ GDDTDGLSPG EWIAAEPSLH
QQLHDALRLY PLNKRDREAA RLVIDALDDD GYLRQELPEL LVAADPAWLL SEQDLAVALR
LVQMLDRPGI AARSLSECLV LQLDAIPAGT PALAEAKAIA REHLERLARR ETAEIQRRLG
CNQQTLHAAC ALVRGLDPRP GNHYGSTRGD YVVPDVIVRQ VRDEWIVTIN PAVLPRARLH
ERYATLFAQS SGERDSPLGQ QLQEARWLIR NVQKRFDTIQ RVGECIVARQ RDFFRYGEIA
MKPLVLRDIA EELDLHESTV SRATGNKYMA TPHGTFEFKH FFPRKLEAAG KGVCSASAAK
VLIRDMIAAE RQTDPLSDVA LAENLAGRGI LLARRTVTKY RQAMKIPPAD LRRRDAA