Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_1352 |
Symbol | |
ID | 4091946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008060 |
Strand | - |
Start bp | 1492813 |
End bp | 1494246 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638014627 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_621231 |
Protein GI | 107022904 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.632235 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCGTCT CGCTTGCGCT GCAGATGCGA CAGCATCTCG CACTTACGCC GAGGCTTCAG CAGTCGCTGC GGCTGCTGCA GTTGTCCTCG CTGGAGTTTC AACAGGAATT GCGTCAGGCG CTCGACATGA ACCCGTTTCT CGAAGACGGC CAGGGCGACG AGGACACCGT TGCCGGCACG CCCGAGCAGC CGACCGAAGC GGCCGCGCCC GAAGCGGCGC CCGAGCACGA CGACATTCGC CCGCCGGATG GCGAGGTGCC GTTTACCGCG GCGCCCGCGC CGCGCGGCAC GAGCCGTCAG GGCGACGATA CCGACGGCCT GTCGCCCGGC GAATGGATCG CCGCCGAGCC GTCGCTGCAT CAGCAACTGC ACGATGCGCT GCGGCTCTAT CCGCTCAACA AGCGCGACCG CGAAGCCGCG CGCCTCGTGA TCGATGCGCT GGACGACGAC GGCTACCTGC GTCAGGAACT GCCTGAACTG CTGGTCGCCG CCGATCCCGC GTGGCTGCTG TCGGAGCAGG ATCTCGCGGT CGCGCTGCGG CTCGTGCAGA TGCTCGACCG GCCGGGTATC GCGGCCCGTT CGTTGTCCGA ATGCCTGGTG TTGCAGCTCG ACGCGATTCC GGCCGGCACG CCGGCGCTCG CGGAAGCGAA GGCGATCGCG CGCGAGCATC TGGAGCGGCT CGCGCGCCGC GAGACGGCCG AGATCCAGCG ACGCCTCGGC TGCAACCAGC AGACGCTGCA CGCGGCCTGC GCGCTGGTGC GCGGGCTCGA CCCGCGCCCG GGCAATCACT ACGGCAGCAC GCGCGGCGAC TACGTGGTGC CCGACGTGAT CGTGCGTCAG GTGCGCGACG AATGGATCGT CACGATCAAT CCGGCCGTGC TGCCGCGCGC CCGCCTGCAC GAGCGCTATG CGACGCTGTT CGCGCAGTCG AGCGGCGAGC GCGATTCGCC GCTCGGCCAG CAGTTGCAGG AAGCGCGCTG GCTGATCCGC AACGTGCAGA AGCGTTTCGA CACGATTCAG CGCGTGGGCG AATGCATCGT CGCGCGGCAG CGCGATTTCT TCCGCTACGG CGAGATCGCG ATGAAGCCGT TGGTGCTGCG CGACATCGCG GAAGAGCTCG ACCTGCACGA ATCGACCGTC TCGCGCGCGA CCGGCAACAA GTACATGGCC ACGCCGCACG GCACGTTCGA GTTCAAGCAT TTCTTCCCGC GCAAGCTGGA AGCAGCCGGC AAGGGCGTGT GTTCGGCGTC GGCCGCGAAG GTGCTGATCC GCGACATGAT CGCGGCCGAG CGGCAGACCG ATCCGCTGTC CGACGTCGCG CTCGCGGAGA ACCTCGCGGG CCGCGGCATC CTTCTTGCGC GCCGCACGGT GACCAAGTAT CGCCAGGCGA TGAAGATTCC GCCGGCCGAC TTGCGGCGCC GCGACGCCGC GTGA
|
Protein sequence | MPVSLALQMR QHLALTPRLQ QSLRLLQLSS LEFQQELRQA LDMNPFLEDG QGDEDTVAGT PEQPTEAAAP EAAPEHDDIR PPDGEVPFTA APAPRGTSRQ GDDTDGLSPG EWIAAEPSLH QQLHDALRLY PLNKRDREAA RLVIDALDDD GYLRQELPEL LVAADPAWLL SEQDLAVALR LVQMLDRPGI AARSLSECLV LQLDAIPAGT PALAEAKAIA REHLERLARR ETAEIQRRLG CNQQTLHAAC ALVRGLDPRP GNHYGSTRGD YVVPDVIVRQ VRDEWIVTIN PAVLPRARLH ERYATLFAQS SGERDSPLGQ QLQEARWLIR NVQKRFDTIQ RVGECIVARQ RDFFRYGEIA MKPLVLRDIA EELDLHESTV SRATGNKYMA TPHGTFEFKH FFPRKLEAAG KGVCSASAAK VLIRDMIAAE RQTDPLSDVA LAENLAGRGI LLARRTVTKY RQAMKIPPAD LRRRDAA
|
| |