Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen_0008 |
Symbol | |
ID | 4091878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia AU 1054 |
Kingdom | Bacteria |
Replicon accession | NC_008060 |
Strand | + |
Start bp | 8351 |
End bp | 10675 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638013265 |
Product | Type II secretion system gspD |
Protein accession | YP_619897 |
Protein GI | 107021570 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGAA ATCGCTTCGT TATGCGGCGT ATCGCCACGA CCCTGCTCGT GGCAGGCATC ATCGTCTCGC AGGCCGCCTA CGCTCAGGTC ACGCTCAATT TCGTGAATGC GGATATCGAC CAGGTCGCGA AAGCGATCGG CGCCGCGACC GGCAAGACCA TCATCGTCGA CCCCCGCGTG AAGGGGCAGC TCAATCTCGT GGCCGAACGG CCGGTGCCGG AAGACCAGGC ATTGAAGACG CTGCAGTCGG CGCTGCGCAT GCAGGGCTTC GCGCTCGTGC AGGATCACGG CGTGCTGAAG GTCGTGCCGG AAGCCGACGC GAAGCTGCAG GGCGTGCCGA CCTACATCGG CAATGCGCCG CAGGCGCGCG GCGACCAGGT GATCACGCAG GTGTTCGAGC TGCACAACGA ATCGGCGAAC AACCTGCTGC CGGTGCTGCG GCCGCTGATC TCGCCGAACA ACACGGTGAC GGCCTACCCG GCGAACAACA CGATCGTCGT GACCGACTAT GCGGACAACG TGCGCCGCAT CGCGCAGATC ATCGCGGGCG TCGACAGCGC CGCGGGCGCG CAGGTGCAGG TCGTGCCGCT GCGCAACGCG AACGCGATCG ACCTCGCCGC GCAACTGCAG AAAATGCTCG ACCCGGGCGC GATCGGCAAC AGCGACGCGA CGCTGAAGGT ATCGGTCACG GCCGACCCGC GCACCAACGC GCTGCTGCTG CGTGCGTCGA ACGCGTCGCG CCTCGCGGCC GCGAAGCGTC TCGTGCAGCA GCTCGACGCG CCGAGCGCGG TGCCCGGCAA CATGCATGTC GTGCCGCTGC GCAACGCCGA TGCGGTGAAG CTCGCGAAGA CGCTGCGCGG GATGCTCGGC AAGGGCGGCA ACGACAGCGG CTCGTCGGCG TCGTCCAACG ATGCGAACAG CTTCAACCAG AACGGCGGCT CGTCGTCGAG CGGCAACTTC TCGACCGGCA CGTCGGGCAC CCCGCCGCTG CCGTCGGGCG GCCTGGGCAG TTCGTCGTCG TCGTCCGGGT ATGGCGGCGG CTCGTCCGGC GGTGGCCTCG GTACCGGCGG CCTGCTCGGC GGTGACAAGG ACAAGAGCGG CGACGACAAC CAGCCGGGCG GGATGATCCA GGCCGACTCG GCCACCAACT CGCTGATCAT CACCGCGTCC GATCCGGTGT ACCGGAACCT GCGCTCGGTG ATCGACCAGC TCGACGCACG GCGTGCGCAG GTCTATATCG AAGCGCTGAT CGTCGAGCTC AACTCGAATA CGTCCGGCAA CCTCGGCATC CAGTGGCAGG TGGCGAGCGG CCAGTTCCTC GGCGGTACGA ACCTGAATCC CACGGGCGGT TTGGGCAACA GCATCATCAA CCTGACGACG GGCGGCACGG CGGCCACCGC CGGGTTGGCC GCCAATCTCG CGAACCTGAA CCAGGGCCTC AACATCGGCT GGTTGCACAA CATGTTCGGC GTGCAGGGGC TCGGCGCGCT GCTGCAGTAT TTTGCGGGCG TGAGCGACGC GAACGTGCTG TCGACGCCGA ACCTGATCAC GCTCGACAAC GAGGAAGCGA AGATCGTCGT CGGCCAGAAC GTGCCGATCG CGACCGGTTC GTATTCGAAC CTGACGAGCG GCACGACGAG CAACGCGTTC AACACCTACG ACCGTCGCGA CGTCGGCCTG ACGCTGCACG TGAAGCCGCA GATCACCGAC GGCGGGATCC TGAAGCTGCA GCTCTATACC GAGGATTCGG CGGTCGTCGC CGGCACGACG AACGCGCAGA CCGGCCCGAC CTTCACGAAA CGCTCGATCC AGTCGACGAT CCTGGCCGAC AACGGCGAGA TCATCGTGCT CGGCGGCTTG ATGCAGGACA ACTACCAGGT GTCGAACAGC AAGGTGCCGC TGCTCGGCGA CATCCCGTGG ATTGGCCAGT TGTTCCGCTC CGAAACGAAG CAGCGCGCGA AAACCAACCT GATGGTGTTC CTGCGCCCGG TGATCATTTC CGATCGCAGC ACCGCGCAGG CAGTCACCGC GAACCGCTAC GACTACATCC AGGGCGTGAC GGGCGCCTAC AAGTCGGACA ACAACGTGAT GCGCGACAAG GACGACCCGG TCGTCCCGCC GATGCCGCTG GGTCCGAGCC AGGGCGGCAC GCCGGCCGGC AATCTGTTCG ATCTCGACAA GATGCGTCGC CAGCAGTTGC AGCGCCAGGT GGTGCCCGTG CCTGCCCAGC CATTGCCGGA AGCAACGCCC GCGCAGCCGC AAAGCGTGCC GCAGCAGGCG GTGCCGCAAC AGCCGCTGAC CACCGCGCCG GGAGCCTCGC AGTGA
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Protein sequence | MTRNRFVMRR IATTLLVAGI IVSQAAYAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV KGQLNLVAER PVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYIGNAP QARGDQVITQ VFELHNESAN NLLPVLRPLI SPNNTVTAYP ANNTIVVTDY ADNVRRIAQI IAGVDSAAGA QVQVVPLRNA NAIDLAAQLQ KMLDPGAIGN SDATLKVSVT ADPRTNALLL RASNASRLAA AKRLVQQLDA PSAVPGNMHV VPLRNADAVK LAKTLRGMLG KGGNDSGSSA SSNDANSFNQ NGGSSSSGNF STGTSGTPPL PSGGLGSSSS SSGYGGGSSG GGLGTGGLLG GDKDKSGDDN QPGGMIQADS ATNSLIITAS DPVYRNLRSV IDQLDARRAQ VYIEALIVEL NSNTSGNLGI QWQVASGQFL GGTNLNPTGG LGNSIINLTT GGTAATAGLA ANLANLNQGL NIGWLHNMFG VQGLGALLQY FAGVSDANVL STPNLITLDN EEAKIVVGQN VPIATGSYSN LTSGTTSNAF NTYDRRDVGL TLHVKPQITD GGILKLQLYT EDSAVVAGTT NAQTGPTFTK RSIQSTILAD NGEIIVLGGL MQDNYQVSNS KVPLLGDIPW IGQLFRSETK QRAKTNLMVF LRPVIISDRS TAQAVTANRY DYIQGVTGAY KSDNNVMRDK DDPVVPPMPL GPSQGGTPAG NLFDLDKMRR QQLQRQVVPV PAQPLPEATP AQPQSVPQQA VPQQPLTTAP GASQ
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