| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6944 |
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| Symbol | |
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| ID | 4454846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008545 |
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| Strand | + |
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| Start bp | 157460 |
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| End bp | 159568 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639699003 |
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| Product | Type IV secretory pathway VirD4 components-like protein |
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| Protein accession | YP_840563 |
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| Protein GI | 116687317 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | [TIGR02759] type IV conjugative transfer system coupling protein TraD |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATC AACGCTCCCC CAGCGGACTC GCCACCTTTT CACGAGGAAC TGCCCTCTGG
TGGCAACAGG CAAAGCTTCT CACCAGTGCG ATCGTGGCGG TTGTCATCGC GGCAATTCTC
GTCGGTGCGC TGGCCGGCGG TGCATACCTG TATTTCGTCA CGTCCGCCGA AACTCGCTAT
TTGACGATCA AGCACGTGGA GGCGGAAATC CTCACAGTCG TTCCGATGGC CAATCCGAAC
GTCTCGTTCC ACCTCGGCAA CGACGACACG GCACTGCCGC CCGCTGCGGC GCTGTCGTTT
ACCGAGGATG CGGCCGACGA GTTCTTCATC TATGCGCGCA ATGCTGCCCT GTACGCTGTT
TTAACCGCTA TTGCCGTCAC GTTCCTTTCC GTCCTGTTTT GGATGGAGTA CGGCCGCGGA
AAACTTACCG ACAAGCAGGT GCGCGGTGCC AAGCTCGTCA AAGCAAAGGA GCTCATCAAG
GAACTGGAGG CTCGAGACGA CGCCAGCCCC TATCGCATCG CCGGCGTGCC GATGCGGAAG
AAGGCCGAAG TGCTCGGCAC ACTCTTTTCT GGTGCCCAAG GCAGTGGCAA GTCCCAGCAG
TTTTTTGCGC TGATGGATCA GGTGCGCGCC CGCAAAAAAC GGGCGATCGT CTATGACCCA
TCAGGCGAAT TCACCGCTGC GTATTACCGC GAAGGGAAGG ACGTCATCCT GAATCCGCTC
GACGCGCGTA GCCCGAACTG GAATGCCTGG CGCGAAATCC AAAGCGAGAT CCATTACGAC
GGGCTGGCTG AGGGGCTCAT CCCGATTCCA CCGAATGTCG CCGACCCATT CTTCGCGATT
GCGGGGCGCA TGGTTTTCAA GGGAGCGATT CGTGCGCTTG GCGGCGACAA CAAACGAACC
AACGCAGCGC TGTACAAGGC CATCGCCCAT AGCAATCTCG AGGAATTGCA CGCGATCCTA
GCGAACGAGT CTGCGGCGAC CTACGTCGAT CCAGTCACTG AGCGTACGGG CATGAGCCTC
AAGATGACCG TGCAGAACCA GCTCGATTGC TTTCGTTACC TGCACGACGA AGGCGAGCCA
TTTTCGATCC GAGAATGGAT CCAGAATGAG GATGAAGACG ACGATTCCTG GCTGTTCATT
ACCGTCAACG AGGAGCAGAA AACCGCCCTG CTTCCGCTCA TCAGCCTCTG GTGTGATATC
GCTATCCGGT CGCTGCTGAC GCTCAAGCCG ATTCATCGCG AACGTCTCTG GTACTTCTAC
GACGAGCTCC CCACTCTGCA AAAGCTCGAG ATCATGAAGC TCGCCGTTAC CAACATTCGG
AAGTACGGCG GTTGCTTCGT ACTCGGCATC CAGGACTTTT CCCAACTCTT CCAGATCTAC
GGCGAGCACT TGGCGCGCAC GATCATCTCC GGATGCCAGA CCAAGCTCCT GTTGCGCGTG
ACCGATGGTG ACGCGGCCAA GGCATTGGCC AACGCGATCG GTCAGGCCGA CCTCGACGAA
AAGGAGGAAA GCCTGAATCT CGGCATCGAC GAGCGGCGCG ACGGCATGAG CGTTTTTGCG
CGACGCAATC TCCGCGATCT CGTCCTCTCA TCAGAAATTC TGCACCTGCC CGACATGCAG
GGCTATCTGG TCACGCCGAG CGACTATCCG GTTGCCCGGG TCAAGTACGA GTACGTCCCC
CATCCCCAAA CGGTGACGCC CTTCATCCCG CGCCAAACGT ACGATCTCTG GCTTCCGGCA
GGCGCTGCAG CTGACCGTCC GGCTGCGCCG GAGAGACAAT CGACTGCGCT ACCTTCCCCG
CCCAGCCCGA CGGCGAGGTT CGGCAGCGAC CCGTCCCCGT CCCACTCCCC GTCACCCAAT
CCTTCCGGCG CACCGACCAC GGCCGCCGAG GATTCGGCGA CCAACGCCGC TTCGGCCGGT
CCGGCTGTCG GTGCCCCCGC GCCGAACACT TCTGGCTGCG TAGCACGACC GTCCAATGTG
ATCTCGCTGT CGACTGGCGA AATCGTCGAC GGTGACACCG GCGAAGTTCA CAGTACGTCG
GCTCCCCGCG AGCCAGTCAC CGGCGAACGG CCCACCGGCC GCGCCGGTCT CGGCGACTTG
TTGGGGTGA
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| Protein sequence | MADQRSPSGL ATFSRGTALW WQQAKLLTSA IVAVVIAAIL VGALAGGAYL YFVTSAETRY
LTIKHVEAEI LTVVPMANPN VSFHLGNDDT ALPPAAALSF TEDAADEFFI YARNAALYAV
LTAIAVTFLS VLFWMEYGRG KLTDKQVRGA KLVKAKELIK ELEARDDASP YRIAGVPMRK
KAEVLGTLFS GAQGSGKSQQ FFALMDQVRA RKKRAIVYDP SGEFTAAYYR EGKDVILNPL
DARSPNWNAW REIQSEIHYD GLAEGLIPIP PNVADPFFAI AGRMVFKGAI RALGGDNKRT
NAALYKAIAH SNLEELHAIL ANESAATYVD PVTERTGMSL KMTVQNQLDC FRYLHDEGEP
FSIREWIQNE DEDDDSWLFI TVNEEQKTAL LPLISLWCDI AIRSLLTLKP IHRERLWYFY
DELPTLQKLE IMKLAVTNIR KYGGCFVLGI QDFSQLFQIY GEHLARTIIS GCQTKLLLRV
TDGDAAKALA NAIGQADLDE KEESLNLGID ERRDGMSVFA RRNLRDLVLS SEILHLPDMQ
GYLVTPSDYP VARVKYEYVP HPQTVTPFIP RQTYDLWLPA GAAADRPAAP ERQSTALPSP
PSPTARFGSD PSPSHSPSPN PSGAPTTAAE DSATNAASAG PAVGAPAPNT SGCVARPSNV
ISLSTGEIVD GDTGEVHSTS APREPVTGER PTGRAGLGDL LG
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