| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6483 |
|---|
| Symbol | |
|---|
| ID | 4454252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008544 |
|---|
| Strand | + |
|---|
| Start bp | 695458 |
|---|
| End bp | 698268 |
|---|
| Gene Length | 2811 bp |
|---|
| Protein Length | 936 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639698546 |
|---|
| Product | ATP dependent DNA ligase |
|---|
| Protein accession | YP_840106 |
|---|
| Protein GI | 116686859 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0603382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA AGCTCGATCC GTATCGCCGC AAGCGCCATT TCGGCGCGAC GCCCGAGCCC
GAAGGGGCGC ACGGCAAGCG TCGCGCGAAG CCGGATACGC AAGCGGCCTC GAAGCCGAAG
GCGAAGCAGC CCGCCGCGCG CGCACGCCAT CCGCTGCGCT TCGTGATCCA GGAGCACCAC
GCGCGCCGGC TGCACTACGA TTTCCGGCTC GAACTCGACG GCACGCTGAA ATCGTGGGCC
GTGCCGAAGG GGCCGAGCTT CGATCCTCAG GTGAAGCGGC TCGCGGTGCA CGTCGAGGAC
CATCCGCTCG AATACGCATC GTTCGAAGGC GAGATTCCGG CCGGGCATTA CGGTGCGGGC
TCGGTCGTCG TGTGGGACGA AGGCACGTGG ACGCCCGATG GCGGCGTCGC GCAGGCGCGC
GAAGGCTACC GGGCCGGCAA ACTGACGTTC CGGCTCGACG GCGAAAAGCT GCACGGCGGC
TGGGCGCTCG TGCGCAGCGG GCGGCAGGAA GGGCGTCAGG AGCAGTGGCT GCTGATCAAG
GAGCGCGACG ACGACGCGCG CAGCGCCGAT GAATTCGACG TCGTCGGCGA GCGGCCGGGT
AGCGTGCATG ACGGCGCGGC CAACGGCGCG GCACGCAAGC GCGCTGCGCG GCGCGGCCGA
TCGACCGACG CGGACGGCGA TGTACATGAC GCGCAACACG CAAGCCACGA AAGCCACGAA
AGCCACGAAA GCCACGCAAG CCATCGCCCC ACCGACCCGT CGCAGGTCGA AGGCGCGGTG
CGCGCGCCGC TGCCCGAGCG CGTCGCGCCC CAACTCGCGA CGCTGGTCGA TGCACCGCCG
ACGCAGGGCG GCTGGTGCTA CGAACTGAAG TTCGACGGCT ACCGCATCCT GGCGCGCATC
GCAGGCAAGG GCGCACGCCG GCGCGTCACG CTGATGACGC GCGAAGGCCG GGACTGGACC
GCGAAACTGC GCGCGCAGCG CGACGCGCTC GCGGCGCTCG ACGTCGACGA CGCATGGCTC
GACGGCGAGG CCGTCGTGCT CGGCGAGAAC GGCCTGCCCG ATTTCCAGGC GCTGCAGAAC
GCGTTCGGCA CGGACCGCTC GGATGCGATC ACCTTCTTCG TGTTCGACCT GCCTTATCTC
GACGGCTACG ACCTGCGCGA CGCGTCGCTC AACGATCGTC GCGCGCTGCT CGAACCGCTG
CTCGCGAACA GCGACCCGGC GCGCGTGCGC TTTTCGCCCG ATCTCGGCGA GGACGTCGCG
TCGCTGATCG CGAGCGCGTG CGACACCGGC CTCGAAGGAC TGATCGGAAA GCGCGCGGAC
TCGCGCTATC GCGCCGGCCG GTCGCCCGCG TGGATCAAGC TCAAATGCCG GCGCCGGCAG
GAGTTCGTGA TCGGCGGCTT TACCGAGCCG TCGGGCAGCC GGCACGGCTT CGGCGCGCTG
CTGCTCGGCG TGCACGAGCC GGCGCCGGCC GGCAAGCGGC GGCGCGGGCC CGGGCCGCTG
CGCTACGTCG GCCGCGTCGG CACCGGCTTC GATGCGCGGA TGCTCGACCG TCTCGCCGCG
ATCCTGCGCA AACACGAGCG CGACACGATG CCGTTCGATG AACCGCCGCG CGAACGCACA
CGCACCCGCG TGCACTGGGT CGAGCCGACG CTCGTCGCCG AATGCGAATT CGCGGAATGG
ACTGGCGACG GGATCGTGCG GCAGGCCGCG TTCATCGCGC TGCGCGAGGA CAAGCCGGCG
GCGCAGATCG TCCGCGAGAT GCCCAAACAC ACGGAAACGG AGGTGACGAT GGATCAACGC
CCGACCCCGC ACGACGACAC ACGCAAGCGC GCATCGCATG CCGCTCGTGA AAGCGCCGAT
CGCAAGCAAT CCGCACGGTC TCGCGCAGCG GCCCGCGCCG AAGACGACGC GTCCGGCCCC
GACACGCTCG GCCGCGTACG CATCACGCAT CCCGAGCGCG TGCTCGACCC GCAAAGCGGC
ACGCGCAAGA TCGACCTCGC GCGGTACTGG CAATGGGTCG CGCCGTGGCT GTTGCCCGAC
CTCGAGGGCC GGCCGGTTTC GCTCGTGCGC GCCCCGGGCG ACATCGCCGG CGAGCTGTTC
TTCCAGAAGC ACGCGGAGCG TCGCGAGATT CCGTTCGTCA CGCAGCACGA AGGGCTCGAC
CCGGGCCACG GACCGCTGCT GTCGATCGAC AACGTCGACG CGCTGCTCGG CGCCGCGCAG
ATGGGCACGG TCGAACTGCA CACGTGGAAC GCGCATGCGT CGAACATCGA GCGGCCCGAC
CGCATCGTGT TCGACCTCGA TCCCGATCCG GCGCTGCCGT GGCGCACGAT GATCGACGCC
GCGCAGCTCG TGCGCGGGCT GCTCGACGAG CTCGGGCTCG TGTCGTTCTG CAAGACGAGC
GGCGGCAAGG GGCTGCACGT CGTCGTGCCG CTCACGCGGC ATGCGGGCTG GGACGACGTG
AAGGACTTTT CGCGCGCGGT CGCGCAGCAC GTCGCCGGCA CGCTGCCCGA CCGCTTCACA
GCGACGATGG GGCCGCGCCA CCGGCGCGGC AAGATCTTCG TCGACTACCT GCGCAACGGG
CGCGGTGCGA GCACGATCGC CGCCTATTCG GTGCGCGCGC GGCCCGGCAT GGGCGTGTCG
GTGCCGCTCG ACTGGGACGA GGTGCCTGAC ACGACGGGCG GCGCGCAATG GACGATCGAC
ACGCTGCACG AACGGCTGGA CACGCTGAAG CGCGACCCGT GGGAAGGCTA CGCGAAGGCG
CGCCAGCGCA TCACCGCGGC GATGCGGGCG CGGCTCGGCG CCGACACGTG A
|
|---|
| Protein sequence | MAGKLDPYRR KRHFGATPEP EGAHGKRRAK PDTQAASKPK AKQPAARARH PLRFVIQEHH
ARRLHYDFRL ELDGTLKSWA VPKGPSFDPQ VKRLAVHVED HPLEYASFEG EIPAGHYGAG
SVVVWDEGTW TPDGGVAQAR EGYRAGKLTF RLDGEKLHGG WALVRSGRQE GRQEQWLLIK
ERDDDARSAD EFDVVGERPG SVHDGAANGA ARKRAARRGR STDADGDVHD AQHASHESHE
SHESHASHRP TDPSQVEGAV RAPLPERVAP QLATLVDAPP TQGGWCYELK FDGYRILARI
AGKGARRRVT LMTREGRDWT AKLRAQRDAL AALDVDDAWL DGEAVVLGEN GLPDFQALQN
AFGTDRSDAI TFFVFDLPYL DGYDLRDASL NDRRALLEPL LANSDPARVR FSPDLGEDVA
SLIASACDTG LEGLIGKRAD SRYRAGRSPA WIKLKCRRRQ EFVIGGFTEP SGSRHGFGAL
LLGVHEPAPA GKRRRGPGPL RYVGRVGTGF DARMLDRLAA ILRKHERDTM PFDEPPRERT
RTRVHWVEPT LVAECEFAEW TGDGIVRQAA FIALREDKPA AQIVREMPKH TETEVTMDQR
PTPHDDTRKR ASHAARESAD RKQSARSRAA ARAEDDASGP DTLGRVRITH PERVLDPQSG
TRKIDLARYW QWVAPWLLPD LEGRPVSLVR APGDIAGELF FQKHAERREI PFVTQHEGLD
PGHGPLLSID NVDALLGAAQ MGTVELHTWN AHASNIERPD RIVFDLDPDP ALPWRTMIDA
AQLVRGLLDE LGLVSFCKTS GGKGLHVVVP LTRHAGWDDV KDFSRAVAQH VAGTLPDRFT
ATMGPRHRRG KIFVDYLRNG RGASTIAAYS VRARPGMGVS VPLDWDEVPD TTGGAQWTID
TLHERLDTLK RDPWEGYAKA RQRITAAMRA RLGADT
|
|---|
| |