Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_5974 |
Symbol | |
ID | 4454702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008544 |
Strand | - |
Start bp | 116285 |
End bp | 116968 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639698035 |
Product | TetR family transcriptional regulator |
Protein accession | YP_839600 |
Protein GI | 116686353 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0426648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00085933 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCAAGCAA GGAAAACCAC GAAGAAGGCA ACCGTCACGC GCGGCGAGGG GCGAGTGCAG GACGCGGCCC AGACGAGCAA GCGCGAGCGC GTCCTCGACG TGGCGGAGCG TCTGTTTGCC GAAGGGGGTT TCGACGGGGT GTCGATGCGG GATATCGCGT CGGCGGCAGA CGTCGGCTTG CCGCTGATCG TGTATCACTT CGAGACGAAG ATGGGGCTGT ATCGTGCGTT GTTCGAGCGC CGCAAAACCG TGCTGGACGC GCGGCTGGCG ATGCTGCGCG AGCCGGTGGC CGCGGGGGAA GATCCGCTCG AGCACATCGT GCGTGCGTTC GTGCTGCCCG TCATGCAGAT CCAGGGTACG GACGCCGGCC TTGCGTACGC GAAGCTCGTG GCACGTGAAG CATCCGATCC GCGCGAAGCG GAGCGCGGCA TCGTCGCCGA ATATTTCGAC CCGTTTGCGG CCGAATTCGT CGGCGCGATC AAAAAGGAGC TCCCCGGCCA TGGCGCCAGC TACGCCCATT GGGCCTACCT GTTCGCCGTC GGCGCGCTGG TGATGAGCGC GTTCGACAGC CGCATCGAGC GGATCTCGAA CGGCAAGGTC AAGGCGGGCG CGTTGAAGAG CAAGACCACG CATCTGGTGA CGTTCATTAC CGCTGGCATT CGGGCAGGCG CAACGCCGGT CTGA
|
Protein sequence | MQARKTTKKA TVTRGEGRVQ DAAQTSKRER VLDVAERLFA EGGFDGVSMR DIASAADVGL PLIVYHFETK MGLYRALFER RKTVLDARLA MLREPVAAGE DPLEHIVRAF VLPVMQIQGT DAGLAYAKLV AREASDPREA ERGIVAEYFD PFAAEFVGAI KKELPGHGAS YAHWAYLFAV GALVMSAFDS RIERISNGKV KAGALKSKTT HLVTFITAGI RAGATPV
|
| |