| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5676 |
|---|
| Symbol | |
|---|
| ID | 4452172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 2796085 |
|---|
| End bp | 2798718 |
|---|
| Gene Length | 2634 bp |
|---|
| Protein Length | 877 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639697737 |
|---|
| Product | RND efflux transporter |
|---|
| Protein accession | YP_839302 |
|---|
| Protein GI | 116693769 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00293298 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTGACAT CTCTCATCGT CCGACTCGTT GCGTGGTCGG TGCGCCGCCC CGTCTGGGTC
GTCGTCCTGT CGCTCGTCAT CGCCGCCTTC AGCGGCGTCT ACGTCGCGCA GCATTTCAAG
ATCAACACCG ACATCAGCAA GCTCGTCGAT GCGGAGCCGC AATGGGCCGC ACTGAGCAAG
GCGGTCGACA ACGCGTTCCC GCAACGCAAC GGCACGATCC TCGCCGTCGT CGAGGCACCC
GCGCCCGAAT TCGCGACTGC CGCCGCGCAT GCACTCACCG AAGCGCTGCG CAAGGACGCC
GATGCCGGCC GTATCGGCCC GGTCGCCGAA CCGGGCGGCG GGCCGTTCTT CGAGCACAAC
GGGCTGCTGT TCCTGTCGCC GCAGGAGGTC TCCGATACGA CCGCGCAGCT CGCGAGCGCC
CGCCCGCTCG TCAACGAACT CGCGAAGAAC CCGAGCCTCA CCGGGCTCGC CACCACGCTG
TCCACCACGC TCGGCCAGCC GCTGCTGACC GGCCAGGTGA AGCTGCCCGC GATGGCGAAG
CTGCTCGCGC GCAGCGCCGC GACGGTCGAC GACGTGCTGG CCGGCAAGCC GGCCGCGTTC
TCGTGGCGCG CGCTGGTCGA CAACGACGCG GCGCGGCAGC CCGCGCGCGC GTTCGTCACC
GTTCAGCCGG TGGTCAACTA CGGCGCGCTG AAGGCCGGCG CGGCAACGAG CCAGGTGATC
CGCGACGCGG CCCGGTCGCT CGAGCTCGAC AAGCGCTACG GCGCGGCCGT GCGCCTGACC
GGCGAACAAC CGCTCGCCGA CGACGAATTC GCGTCGGTCG AAGACGGCGC CGCACTCAAC
GGCGTACTCA CGCTGCTCGC CGTGCTCGTG ATCCTGTGGC TCGCGCTGCG CTCGAAGCGG
ATGATCGGCT CGGTGCTCGT CACGCTGTTC GTCGGCCTCG TCGTGACGGC CGCGCTCGGC
CTCGCGATGG TCGGCTCGCT GAACATGATC TCGGTCGCGT TCATGGTGCT GTTCGTCGGC
CTCGGCGTCG ATTTCTCGAT CCAGTACGGC GTGAAGTATC GCGAGGAACG CTTCCGCGAC
GAGCGCATCG ATCACGCACT GATCGGCGCC GCGCATTCGA TGGGCATGCC GCTCGCGCTG
GCCACGGCGG CCGTCGCGGC GAGCTTCTTC TCGTTCATCC CGACCGCGTA TCGCGGCGTG
TCCGAGCTCG GTCTGATCGC GGGCGTCGGG ATGTTCGTCG CGCTGCTGAC CACGCTCACG
CTGCTGCCGG CGCTGCTGCG CCTGTTCGCG CCGCCGGGCG AATCGAAGAC GCCGGGTTTC
CCGTGGCTCG CGCCCGTCGA CGATTACCTC GATCGCCATC GCAAGCCGAT CCTGATCGGC
ACGCTCGCGG TCGTGATCGG CGCGCTGCCG CTGCTCGCGT TCCTGCATTT CGACTTCAAC
CCGCTGCACC TGAAGGACCC GAACAGCGAA TCGATGGCGA CGCTGCTCGC GCTGAAGGAT
TCGCCGGAAG CCGCCGTCAA CGACGTCACG CTGCTCGCGC CGTCGCTCGC GCAGGCCGAT
GCGGTCGCGA AGCGCCTCGA CGCGCTGCCC GAAGTCGGCC GCACGACCAC GCTGTCGACC
TTCATCCCGG CCGACCAGCC GGCCAAGCGC GCGGCGATCG CCGCGGCCGC GAGCGAACTG
CTGCCCGCGC TGACACAGCC GGCCGCGCCG CCCGCGACCG ACGCGCAACG CGTGGCCGCG
CTCAAGCGCG TGTCGGATCT GCTGAGCTAT GCAGCCGAAG ATCACCCGGG CCCGGGCGCA
GCGGCCGCGC AGCACCTGTC CGCGTCGCTC GCGAAGCTTG CCGCCGCCGA CAGCGCGACG
CGCGACCGTG CCGAGCGCGC ATTCTCCGAT ACGCTGCGCA TCGCGCTCAA CCAGCTCGCC
GCGCTGCTGC AGCCGCAAGA CATCACGCGC GAATCGCTGC CGCCGCAGAT CGTGCGCGAC
TGGGTCGCGC CGGACGGCCA CGCGCTCGTG CAGATCTCGC CGAAGGTGCC GAAGGGCGTC
GATCCGAACG ACGACACGAT GCTGCGCCGT TTCGCCAAGG CCGTGAAGGC CGCGGAACCG
GGTACGACCG GCGGGCCGAT CTCGATCCTG CATTCGGCCG ACACGATCAT CAACGCGTTC
CTGCACGCGG CGATGTGGTC GATCATCTCG ATCACGGTCC TGCTGTGGGT CACGTTGCGC
CGCTTCGGCG ACGTGCTGCG CACGCTCGTG CCGCTGCTCG TGTCGGGCAT CGTGACGCTC
GAGATGTGCG TCGTGCTCGG CATGTCGCTG AACTTCGCGA ACATCATCGC GCTGCCGCTG
ATGCTCGGCG TCGGCGTCGC GTTCAAGGTG TATTTCGTGA TGGCGTGGCG CGCGGGGCAG
ACGGGCCTGC TGCATTCGAG CCTCACGCAC GCCGTGCTGT TCAGCGCCGC GACGACGGCA
ACCGCCTTCG GCAGCCTGTG GCTGTCGCAC CATCCGGGCA CGTCGAGCAT GGGCAAGCTG
CTCGCGCTGG CCCTGACCTG TACGCTGATC GGCGCCGTGG TGTTCCAGCC CGTCCTGATG
GGCAAACCGC GCGTCAAGCG CGCCAAGAAC CAATCGCAAG GAATCAATGA ATAA
|
|---|
| Protein sequence | MVTSLIVRLV AWSVRRPVWV VVLSLVIAAF SGVYVAQHFK INTDISKLVD AEPQWAALSK
AVDNAFPQRN GTILAVVEAP APEFATAAAH ALTEALRKDA DAGRIGPVAE PGGGPFFEHN
GLLFLSPQEV SDTTAQLASA RPLVNELAKN PSLTGLATTL STTLGQPLLT GQVKLPAMAK
LLARSAATVD DVLAGKPAAF SWRALVDNDA ARQPARAFVT VQPVVNYGAL KAGAATSQVI
RDAARSLELD KRYGAAVRLT GEQPLADDEF ASVEDGAALN GVLTLLAVLV ILWLALRSKR
MIGSVLVTLF VGLVVTAALG LAMVGSLNMI SVAFMVLFVG LGVDFSIQYG VKYREERFRD
ERIDHALIGA AHSMGMPLAL ATAAVAASFF SFIPTAYRGV SELGLIAGVG MFVALLTTLT
LLPALLRLFA PPGESKTPGF PWLAPVDDYL DRHRKPILIG TLAVVIGALP LLAFLHFDFN
PLHLKDPNSE SMATLLALKD SPEAAVNDVT LLAPSLAQAD AVAKRLDALP EVGRTTTLST
FIPADQPAKR AAIAAAASEL LPALTQPAAP PATDAQRVAA LKRVSDLLSY AAEDHPGPGA
AAAQHLSASL AKLAAADSAT RDRAERAFSD TLRIALNQLA ALLQPQDITR ESLPPQIVRD
WVAPDGHALV QISPKVPKGV DPNDDTMLRR FAKAVKAAEP GTTGGPISIL HSADTIINAF
LHAAMWSIIS ITVLLWVTLR RFGDVLRTLV PLLVSGIVTL EMCVVLGMSL NFANIIALPL
MLGVGVAFKV YFVMAWRAGQ TGLLHSSLTH AVLFSAATTA TAFGSLWLSH HPGTSSMGKL
LALALTCTLI GAVVFQPVLM GKPRVKRAKN QSQGINE
|
|---|
| |